View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717-Insertion-4 (Length: 719)
Name: NF4717-Insertion-4
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 220 - 719
Target Start/End: Original strand, 38496403 - 38496899
Alignment:
| Q |
220 |
aaatatgtctctaatgtaatctctgagtgttggagacatcaaatttggtaaaatatggtaaccaataaatattaatttttccgtctctaattttcatttt |
319 |
Q |
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| T |
38496403 |
aaatatgtctctaatgtaatctctaagtgttggagacatcaaatttggtaaaatatggtaaccaataaatattaatttttccgtctctaattttcatttt |
38496502 |
T |
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| Q |
320 |
taataacctttttcgatacatgataaaacaaatatgagaattgaactgtttttgtctcaccatggatttacaatggatctatgcaaggataggaatggag |
419 |
Q |
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| T |
38496503 |
tattaacctttttcgatacatgataaaacaaatatgagaattgaactgtttttgtctcaccatggatttacaatggatccatgcaaggataggaatggag |
38496602 |
T |
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| Q |
420 |
tacttcttcctccaaagctagaagtgaggtattcttttgatttttgaggattggttgtgagtagggtttgtgttaggtttgatgtagaatctgattcaga |
519 |
Q |
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| T |
38496603 |
tacttc---ctccaaagctagaagtgaggtattcttttgatttttgaggattggttgtgagtagggtttgtgttaggtttgatgtagaatctgattcaga |
38496699 |
T |
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| Q |
520 |
tgtaagtgaagaagctatggaactgaaggctttcaaagattgattgcaatctaaagaagggaaagtaaggtttgttgggaaaggaatgaaccccatttgt |
619 |
Q |
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| T |
38496700 |
tgtaagtgaagaagctatggaactgaaggctttcaaagattgattgcaatctaaagaagggaaagtaaggtttgttgggaaaggaatgaaccccatttgt |
38496799 |
T |
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| Q |
620 |
gtggaaatctgattctcctcctcaaataagtggtggtcaataatttgggacatcacttcttcttatgatctctctatccttctcccttttcttctctata |
719 |
Q |
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| T |
38496800 |
gtggaaatctgattctcctcctcaaataagtggtggtcaataatttgggacatcacttcttcttatgatctctctatccttctcccttttcttctctata |
38496899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 38496185 - 38496377
Alignment:
| Q |
8 |
gatgatctactccatttcttttaccactattattcatgcaattacttattacttctcctcccaatattgccctatattgagacaaatttacaacatccat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496185 |
gatgatctactccatttcttttaccactattattcatgcaattacttattacttctcctcccaatattgccctatattgagacaaatttacaacatccat |
38496284 |
T |
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| Q |
108 |
caaaccatcgatatatcaatctctttagcaagattagnnnnnnnntagtcaattaactaattagctaaaacaaattgaagtagcaacggaaattt |
202 |
Q |
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| T |
38496285 |
caaaccatcgatatatcaatctctttagcaagatta--aaaaaaatagtcaattaactaattagctaaaacaaattgaagtagcaaaggaaattt |
38496377 |
T |
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