View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4717-Insertion-6 (Length: 665)

Name: NF4717-Insertion-6
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4717-Insertion-6
NF4717-Insertion-6
[»] chr4 (4 HSPs)
chr4 (348-665)||(17769423-17769739)
chr4 (581-618)||(29601022-29601059)
chr4 (552-605)||(47118950-47119003)
chr4 (538-618)||(50742809-50742887)
[»] chr1 (6 HSPs)
chr1 (556-610)||(31517729-31517783)
chr1 (566-609)||(2462980-2463023)
chr1 (583-618)||(25479600-25479635)
chr1 (585-618)||(33975589-33975622)
chr1 (557-617)||(3223688-3223747)
chr1 (553-609)||(37593670-37593726)
[»] chr7 (5 HSPs)
chr7 (552-605)||(19719038-19719091)
chr7 (557-615)||(12234879-12234937)
chr7 (552-610)||(25670571-25670629)
chr7 (585-618)||(21453313-21453346)
chr7 (552-609)||(46104552-46104609)
[»] chr5 (3 HSPs)
chr5 (552-665)||(17258868-17258980)
chr5 (582-665)||(28586781-28586863)
chr5 (558-607)||(12467163-12467212)
[»] chr2 (4 HSPs)
chr2 (552-665)||(33256713-33256825)
chr2 (582-662)||(13736308-13736387)
chr2 (552-601)||(680539-680588)
chr2 (578-618)||(24141662-24141702)
[»] chr8 (5 HSPs)
chr8 (561-665)||(26716432-26716535)
chr8 (582-617)||(31862513-31862548)
chr8 (584-665)||(29973054-29973134)
chr8 (552-616)||(13459666-13459730)
chr8 (582-618)||(20672769-20672805)
[»] chr3 (2 HSPs)
chr3 (556-610)||(41633387-41633441)
chr3 (581-618)||(6483820-6483857)
[»] chr6 (1 HSPs)
chr6 (538-618)||(31686336-31686414)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 348 - 665
Target Start/End: Original strand, 17769423 - 17769739
Alignment:
Q  348 ttcagtggacattctaactaaggatttatcaatattctat-ctggatttccctcaatgcaactaatctaaattagcatatctcattacttctaacttcta 446  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17769423 ttcaatggacattctaactaaggatttatcaatattctaaactggatttccctcaatgcaactaatctaaattagcatatctcattacttctaacttcta 17769522  T
Q  447 aatagacacatcaaataacatatagaccatgggcctatttagattagctcatttgagcttatatactcctatactagcattagcacacacttttgagaga 546  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  17769523 aatagacacgtcaaataacatatagaccatgggcctatttagattaactcatttgagcttatatactattatactagcattag--cacacttttgagaga 17769620  T
Q  547 acttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgt 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |    
T  17769621 acttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctacgaaaactgcttacaggttttat 17769720  T
Q  647 gaaaatagtttgactttat 665  Q
    |||||||||||||||||||    
T  17769721 gaaaatagtttgactttat 17769739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 29601022 - 29601059
Alignment:
Q  581 actgttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  29601022 actgttttcagcttattttcataagttctctaggatag 29601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 605
Target Start/End: Original strand, 47118950 - 47119003
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 605  Q
    |||||||||||||||||||||  |||  |  |||||||||||||||||||||||    
T  47118950 tatgaaaacaactcatgacattgttattggttgttttcagcttatcttcataag 47119003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 618
Target Start/End: Original strand, 50742809 - 50742887
Alignment:
Q  538 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||||  |||||||  |||||||||||| | |  ||||||||| || || ||||||||||||| |||||||    
T  50742809 tttgagagaacttat--gaaaacagttcatgacatgttcataccctgttttcaactcattttcataagctctccaggatag 50742887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 610
Target Start/End: Original strand, 31517729 - 31517783
Alignment:
Q  556 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 610  Q
    |||||||||||||||||||| | |  ||||||||||||||| |||||||||||||    
T  31517729 aaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 609
Target Start/End: Complemental strand, 2463023 - 2462980
Alignment:
Q  566 atgacatgtttagagactgttttcagcttatcttcataagctct 609  Q
    |||||||||||| |||||||||||||||||| |||| |||||||    
T  2463023 atgacatgtttatagactgttttcagcttattttcacaagctct 2462980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 618
Target Start/End: Complemental strand, 25479635 - 25479600
Alignment:
Q  583 tgttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||| |||||||||||||||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatag 25479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 618
Target Start/End: Complemental strand, 33975622 - 33975589
Alignment:
Q  585 ttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||| |||||||||||||||||||||    
T  33975622 ttttcagcttattttcataagctctctaggatag 33975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 617
Target Start/End: Complemental strand, 3223747 - 3223688
Alignment:
Q  557 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggata 617  Q
    |||||||| |||||||||||| |   |||||||||||||| ||||||||||| ||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttat-ttcataagctcgctaggata 3223688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 37593670 - 37593726
Alignment:
Q  553 atgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 609  Q
    ||||| |||||| |||||||||| | |  ||||||||||||||| ||||||||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 19719091 - 19719038
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 605  Q
    ||||||||||||| |||||||||| | | ||||||||||||||||||| |||||    
T  19719091 tatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataag 19719038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 615
Target Start/End: Original strand, 12234879 - 12234937
Alignment:
Q  557 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctagga 615  Q
    |||||||| ||||||||| || |  ||||||||||||||| | ||||||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctagga 12234937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 25670571 - 25670629
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 610  Q
    ||||||||||||| |||||||||| | | | |||||||||||||| |||| ||||||||    
T  25670571 tatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctc 25670629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 618
Target Start/End: Complemental strand, 21453346 - 21453313
Alignment:
Q  585 ttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||||||| |||||||||||||||    
T  21453346 ttttcagcttatcttcattagctctctaggatag 21453313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 46104552 - 46104609
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 609  Q
    |||||||||||||||||||||||  | | | ||||| |||||||| ||||||||||||    
T  46104552 tatgaaaacaactcatgacatgtcaataaaatgtttccagcttattttcataagctct 46104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 665
Target Start/End: Original strand, 17258868 - 17258980
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 651  Q
    |||||||| | || |||||||||| | |  ||||||||||||||| ||||||||||||  |||||| || ||| ||||| |||||| | || |  |||||    
T  17258868 tatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggata-gtttatgaaaacagcttattgattgtacgaaaa 17258966  T
Q  652 tagtttgactttat 665  Q
    ||||||||||||||    
T  17258967 tagtttgactttat 17258980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 665
Target Start/End: Original strand, 28586781 - 28586863
Alignment:
Q  582 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttat 665  Q
    ||||||||||||||| |  |||||||||||||||||| ||  ||||||| |||||||  || | |||||| |||||||||||||    
T  28586781 ctgttttcagcttatttcgataagctctctaggatagctc-gtcaaaacagcttataatttatatgaaaacagtttgactttat 28586863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  558 aacaactcatgacatgtttagagactgttttcagcttatcttcataagct 607  Q
    ||||||| |||||||||||| |  ||||||||||||||| ||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 665
Target Start/End: Complemental strand, 33256825 - 33256713
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 651  Q
    |||||||||| || |||||||||| | | |||||| ||||||||| |||||| | |||  ||||| | | ||| |||||||||||||| || | ||||||    
T  33256825 tatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggct-tatgaaaactgcttatagtttatatgaaaa 33256727  T
Q  652 tagtttgactttat 665  Q
     |||||||||||||    
T  33256726 cagtttgactttat 33256713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 662
Target Start/End: Original strand, 13736308 - 13736387
Alignment:
Q  582 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactt 662  Q
    |||||||||  |||| |||||||||||||||| |||| | ||| ||||| |||||||| |  |||||||||||||||||||    
T  13736308 ctgttttcaagttattttcataagctctctagtatagct-tatgaaaacagcttatagctgatgtgaaaatagtttgactt 13736387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 680588 - 680539
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttca 601  Q
    |||||||||| || |||||||||||| | |||||||||||||||| ||||    
T  680588 tatgaaaacagcttatgacatgtttataaactgttttcagcttattttca 680539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 618
Target Start/End: Original strand, 24141662 - 24141702
Alignment:
Q  578 gagactgttttcagcttatcttcataagctctctaggatag 618  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  24141662 gagactgttttcagcttgttttcataagctctataggatag 24141702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 665
Target Start/End: Original strand, 26716432 - 26716535
Alignment:
Q  561 aactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgac 660  Q
    ||||||| ||||||||  |  ||||||||||||||| | | ||| |||||||||||||||| || ||||   ||||||| |||||| |||||| ||||||    
T  26716432 aactcataacatgtttgtaagctgttttcagcttatttccgtaacctctctaggataggtc-attaaaaaatcttatagcttttgtaaaaataatttgac 26716530  T
Q  661 tttat 665  Q
    |||||    
T  26716531 tttat 26716535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 617
Target Start/End: Complemental strand, 31862548 - 31862513
Alignment:
Q  582 ctgttttcagcttatcttcataagctctctaggata 617  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31862548 ctgttttcagcttattttcataagctctctaggata 31862513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 665
Target Start/End: Complemental strand, 29973134 - 29973054
Alignment:
Q  584 gttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttat 665  Q
    |||||||| |||| | ||||| ||||| ||||||| | ||| |||||  ||||||| || ||||||||||||||||||||||    
T  29973134 gttttcagtttatttccataaactctcaaggatagct-tatgaaaacaacttatagcttatgtgaaaatagtttgactttat 29973054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 13459730 - 13459666
Alignment:
Q  552 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggat 616  Q
    |||||||||| || ||||||| || | | |||||||||||| ||| |||||||||||| ||||||    
T  13459730 tatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctctgtaggat 13459666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 618
Target Start/End: Complemental strand, 20672805 - 20672769
Alignment:
Q  582 ctgttttcagcttatcttcataagctctctaggatag 618  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatag 20672769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 610
Target Start/End: Complemental strand, 41633441 - 41633387
Alignment:
Q  556 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 610  Q
    ||||||| ||||||||||| || | | |||||||||||||| |||||||||||||    
T  41633441 aaaacaaatcatgacatgtctataaattgttttcagcttattttcataagctctc 41633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 6483857 - 6483820
Alignment:
Q  581 actgttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||||| || ||||||||||||||||||    
T  6483857 actgttttcagcttattttaataagctctctaggatag 6483820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 618
Target Start/End: Original strand, 31686336 - 31686414
Alignment:
Q  538 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 618  Q
    |||||||||||||||   ||||||||| |||||| ||||| |  ||||||||||||||| | | ||||||||| |||||||    
T  31686336 tttgagagaacttatc--aaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctccaggatag 31686414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University