View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717-Insertion-9 (Length: 393)
Name: NF4717-Insertion-9
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 40253419 - 40253035
Alignment:
| Q |
7 |
accttttttcatttacttagacataaattaattattaagtactaattttttggttatgaatttctttgctagtcttgagttttagattagaagtactaat |
106 |
Q |
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| T |
40253419 |
accttttttcatttacttagacataaattaattattaagtactaattttttggttatgaatttctttgctagtcttgagttttagattagaagtactaat |
40253320 |
T |
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| Q |
107 |
atttatcttttcaaaactaacctataaggttagggttcagaccttatattttttcaacatatagcatgtgttttttccaatataacatttgatgctcgtc |
206 |
Q |
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| T |
40253319 |
atttatcttttcaaaactaacctataaggttagggttcagaccttatattttttcaacatataacatgtgttttttccaatatatcatttgatgctcgtc |
40253220 |
T |
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| Q |
207 |
gttattgggcttgatatatacgtgtggaaatatattgagttgagcctaactaatcgatcttacaaaaaataatttgtaaggaacaattagactaaatata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40253219 |
attattgggcttgatatatacgtgtggaaatatattgagttgagcctaactaatcaatcttacaaaaaataatttgtaaggaacaattagactaaatata |
40253120 |
T |
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| Q |
307 |
agaaaaaagagaaaagatagaataccagaaccatagtcaatacaagatatacgttggatcactcatcatggacttatcactttgatc |
393 |
Q |
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| T |
40253119 |
aaaataaaaaaaaaaaat--gataccagaattagagtcaatacaagatatacgttggatcactcatcatcaacttatcactttgatc |
40253035 |
T |
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