View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717_low_1 (Length: 682)
Name: NF4717_low_1
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 88 - 580
Target Start/End: Original strand, 9574577 - 9575077
Alignment:
| Q |
88 |
tataggttgaggctaaactcaatagtgccatgaat------aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaacaagcacac |
181 |
Q |
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| T |
9574577 |
tataggttgaggctaaactcaatagtgccatgaatgtaatgaataatacttttcataaagacatgtgttgtgtttttggggtatgtataaacaagcacac |
9574676 |
T |
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| Q |
182 |
ttcttgaacttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgaggttatgatattatgttggatcttcataggagtttctt |
281 |
Q |
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| T |
9574677 |
ttcttgaacttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgaggctatgatattatgttggatcttcataggggtttcat |
9574776 |
T |
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| Q |
282 |
gaagaaccactgagttttgcctttgtattcacatgtgtgggtgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcatatttatttt |
381 |
Q |
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| T |
9574777 |
gaagaaccactgagttttgcctttgtattcacatgtatgggtgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcatatttatttt |
9574876 |
T |
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| Q |
382 |
gagaaagaaaaataactggacggg--tgatgacttcacgaaaaattcaaagttaagcttagacataatcaattcataaagagagtcagaagaagcggcaa |
479 |
Q |
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| T |
9574877 |
gagaaagaaaaataactggacgggcctcaatccttcatggaaaattcaaagttaagcttagacataatcaattcataaagatagtcagaagaagcggcaa |
9574976 |
T |
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| Q |
480 |
gaataatggcatccacatacaaaagaatatagacgatgtcattgccatgttgataaataaataaagagtggtcaaaataatttgagagaatcccattgtg |
579 |
Q |
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| T |
9574977 |
gaatgatgtcatccacatacaaaagaatatagacggtgtcattgccatgttgataaataaataaagagtggtcaaaataatttaagagaatcccattgtg |
9575076 |
T |
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| Q |
580 |
g |
580 |
Q |
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| T |
9575077 |
g |
9575077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 577 - 666
Target Start/End: Original strand, 9575109 - 9575198
Alignment:
| Q |
577 |
gtggggtgcttgtataagtccatggagagaattttttagaagacagacatggccagggagttgagtatgatgtaaaccaggaggttggtg |
666 |
Q |
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| T |
9575109 |
gtggggtgcttgtataagtccatggagagaattttttagaagacatacatggccagggagttgagtatgatgtaaaccaggaggttggtg |
9575198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 9574517 - 9574558
Alignment:
| Q |
26 |
gggacatccagcccagtctgtgtttgtataagtgagtagttt |
67 |
Q |
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| T |
9574517 |
gggacatctagcccagtctatgtttgtataagcgagtagttt |
9574558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
140 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
220 |
Q |
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| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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