View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717_low_3 (Length: 353)
Name: NF4717_low_3
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 17389748 - 17389519
Alignment:
| Q |
5 |
ggtagattattctcaatacatacaaagaagtagatccaatttaagagacaaagttgcaaagacgaaagaattcgtgattatttttcacgaatggataagt |
104 |
Q |
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| T |
17389748 |
ggtaaattatgctcaatacatacaaagaagtagatccaatttaagagacaaagttgcaaagacgaaagtatttgtgattatttttcacgaatggataagt |
17389649 |
T |
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| Q |
105 |
tgtttgagaaatgaagaatatcagtaatagtataacagaaaaaataagtcatgtagaaaattatgtgcacacctacaagtaaatccaattatgacctaac |
204 |
Q |
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| T |
17389648 |
tgtttgagaaatgaagaatatcaataatagtataacagaaaaaataagtcatgtagaaaattatgtgcacacctacaagtaaatccaattatgacctaac |
17389549 |
T |
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| Q |
205 |
aacaattcaaaattcaaaagatattgacac |
234 |
Q |
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| T |
17389548 |
aacaattcaaaattcaaaagatattgacac |
17389519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 17384488 - 17384365
Alignment:
| Q |
230 |
gacacaacgaccatggataattttcaaagctgacaaatgagggattttagaggtaaaccgcaaccaaagagggtagatttttaaaggtagaggaaggttt |
329 |
Q |
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| T |
17384488 |
gacacaacgaccatggataatttgcaaagctgacaaatgagggattttagaggtaaaccgcaaccaaagagggtagatttttaaaggtagaggaaggttt |
17384389 |
T |
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| Q |
330 |
ccgcataataactcaagaaattga |
353 |
Q |
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| T |
17384388 |
ccgcataataactcaagaaattga |
17384365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 17380645 - 17380468
Alignment:
| Q |
59 |
tgcaaagacgaaagaattcgtgattatttttcacgaatggataagttgtttgagaaatgaagaatatcagtaatagtataacagaaaaaataagtcatgt |
158 |
Q |
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| T |
17380645 |
tgcaaagatgaaagtatttgtgattatttttcaggaacagagaatttggctgagaaatgaagaatatcagtaatagtataacagaaaaattaagtcatgt |
17380546 |
T |
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| Q |
159 |
agaaa-attatgtgcacacctacaagtaaatccaattatgacctaacaacaattcaaaattcaaaagatattgacacaa |
236 |
Q |
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| T |
17380545 |
agaaatattttgtgcagacc-acacttcaatccaattaagacctaacaacaattcaaaattcaaaagatattgacacaa |
17380468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 19807861 - 19807803
Alignment:
| Q |
61 |
caaagacgaaagaattcgtgattatttttcacgaatggataagttgtttgagaaatgaa |
119 |
Q |
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| T |
19807861 |
caaagatgaaagtatttgtcattatttttcacgaatggacaagttggtcgagaaatgaa |
19807803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 38546006 - 38546066
Alignment:
| Q |
112 |
gaaatgaagaatatcagtaatagtataacagaaaaaataagtcatgtagaaaattatgtgcaca |
175 |
Q |
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| T |
38546006 |
gaaacgaagaata-cagtaataatataacagaaaaga--agtcatgtataaaattatgtgcaca |
38546066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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