View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717_low_6 (Length: 215)
Name: NF4717_low_6
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37842532 - 37842746
Alignment:
| Q |
1 |
attaattactagttcactcattccaggaaaacacaaaaatagaacaatagaggacacagaattgttacttgttcgagaatttgaaataaatcatgtacag |
100 |
Q |
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| T |
37842532 |
attaattactagttcactcattccaggaaaacacaaaaatagaacaatagaggacacagaattgttacttgttcgagaatttgaaataaatcatgtacag |
37842631 |
T |
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| Q |
101 |
cacgaggaataactccaggctcagctttggatccacgcattgtatgagtcttacaactattagtttgtccatatgcgaaaacagtaccttcaattaaaaa |
200 |
Q |
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| T |
37842632 |
cacgaggaataactccaggctcagctttcgatccacgcattgtatgagtcttaccactattagtttgtccatatgcgaaaacagtaccttcaattcaaaa |
37842731 |
T |
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| Q |
201 |
accctaagttaattt |
215 |
Q |
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| T |
37842732 |
accctaagttaattt |
37842746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 37842139 - 37842233
Alignment:
| Q |
12 |
gttcactcattccaggaaaacac--aaaaatagaacaatagaggacacagaattgt---tacttgttcgagaatttgaaataaatcatgtacagca |
102 |
Q |
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|||| ||||||||| |||||||| |||||| ||||| ||||| ||||||| | || ||||||||| |||||||||||||||| |||||||||| |
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| T |
37842139 |
gttccctcattccaagaaaacacgaaaaaattgaaca-tagagaacacagattggtaattacttgttcaagaatttgaaataaatgatgtacagca |
37842233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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