View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-10 (Length: 515)
Name: NF4718-Insertion-10
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 130 - 515
Target Start/End: Original strand, 6491368 - 6491757
Alignment:
| Q |
130 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatgga--------atgctcaaattagggacgac |
221 |
Q |
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| T |
6491368 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatggaggatcaatatgctcaaattagggacgac |
6491467 |
T |
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| Q |
222 |
gacgacggtgaaaacattgttggataatactagaacccttgtgaaagaagttcattttctcagcaccaactaagannnnnnnnnatacaaaccgtgcttt |
321 |
Q |
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| T |
6491468 |
gacg---gtgaatacattgttggataatactagaacccttgtgaaataagttcattttctcagcaccaactaagatttttttt-atacaaaccgtgcttt |
6491563 |
T |
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| Q |
322 |
aataataaggattcatatccagattggacaagaccatacatcaaaagtaatttctattcacaccttatcgtgctcgagaatttgtttggtaagtatacta |
421 |
Q |
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| T |
6491564 |
aataataaggattcatatccagattggacaagaccatacatcaaaagtaatttctattcacaccttatcgtgctcgagattttgtttggtaagtatacta |
6491663 |
T |
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| Q |
422 |
gttcttttattttgtttctatttgcataaacaaccttagccctatgaaaactcgtaatttaaaattaatttcagactaatgtttctagctatgg |
515 |
Q |
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| T |
6491664 |
gttcttttattttgtttctatttgcataaacaaccttagccctatgaaaactcgtaatttaaaattaatttcagactaatgtttctagcaatgg |
6491757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 6491206 - 6491321
Alignment:
| Q |
7 |
agaagccgaacttgtttatgtaatgtggtcgagtgatgaaagtatgttgggtttttccaaacattccagttgtttatctattaccagatttggccatgcg |
106 |
Q |
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| T |
6491206 |
agaagccgaacttgtttatgtaatgtggtcgagtgatgaaagtatgttgggtttttccaaacattccagttgtttatctattaccagattttgccatgcg |
6491305 |
T |
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| Q |
107 |
gatctttagaccattc |
122 |
Q |
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| T |
6491306 |
gatctttagaccattc |
6491321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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