View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-13 (Length: 464)
Name: NF4718-Insertion-13
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 39624103 - 39624554
Alignment:
| Q |
8 |
tgtctgtctatatattaaatttccacaaaccagcctagctactatcattgaatttgaaattaaatgtcaatgtagacctgtgattcatggctggcatagc |
107 |
Q |
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| T |
39624103 |
tgtctgtctatatattaaatttccacaaaccagcctagctactatcattgaatttgaaattaaatgtcaatgtagacctgtgattcatggctggcatagc |
39624202 |
T |
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| Q |
108 |
aacactctaa-tctcataaacacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatct |
206 |
Q |
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| T |
39624203 |
aacactctaattctcataaacacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatct |
39624302 |
T |
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| Q |
207 |
caaatgcattttgcac-aagtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattatt |
305 |
Q |
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| T |
39624303 |
caaatgcattttgcacaaagtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattatt |
39624402 |
T |
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| Q |
306 |
agatgtgaataatccatccaactctgtattggcatgtggtttagcaacnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattatt |
405 |
Q |
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| T |
39624403 |
agatgtgaata----atccaactctgtattggcatgtggtttagcaac---aaaaaaaaaatcattttgaaaatcagaagcaagctttattttcattatt |
39624495 |
T |
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| Q |
406 |
aatgcttttaacttacaagttagaattgattacatggtgtttgagtttgacgattgtag |
464 |
Q |
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| T |
39624496 |
aatgcttttaacttacaagttagaattgattacatggtgtttgagtttgacgattgtag |
39624554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 39633653 - 39634104
Alignment:
| Q |
8 |
tgtctgtctatatattaaatttccacaaaccagcctagctactatcattgaatttgaaattaaatgtcaatgtagacctgtgattcatggctggcatagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39633653 |
tgtctgtctatatattaaatttccacaaaccagcctagctactatcattgaatttgaaattaaatgtcaatgtagacctgtgattcatggctggcatagc |
39633752 |
T |
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| Q |
108 |
aacactctaa-tctcataaacacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatct |
206 |
Q |
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| T |
39633753 |
aacactctaattctcataaacacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatct |
39633852 |
T |
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| Q |
207 |
caaatgcattttgcac-aagtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattatt |
305 |
Q |
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| T |
39633853 |
caaatgcattttgcacaaagtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattatt |
39633952 |
T |
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| Q |
306 |
agatgtgaataatccatccaactctgtattggcatgtggtttagcaacnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattatt |
405 |
Q |
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| T |
39633953 |
agatgtgaata----atccaactctgtattggcatgtggtttagcaac---aaaaaaaaaatcattttgaaaatcagaagcaagctttattttcattatt |
39634045 |
T |
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| Q |
406 |
aatgcttttaacttacaagttagaattgattacatggtgtttgagtttgacgattgtag |
464 |
Q |
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| T |
39634046 |
aatgcttttaacttacaagttagaattgattacatggtgtttgagtttgacgattgtag |
39634104 |
T |
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