View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-14 (Length: 443)
Name: NF4718-Insertion-14
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 43439568 - 43440002
Alignment:
| Q |
8 |
tgaagaaggttataatatcattgagttagtgttgttcatagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacat |
107 |
Q |
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| T |
43439568 |
tgaagaaggttatagtatcattgagttagtgttgttcatagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacat |
43439667 |
T |
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| Q |
108 |
tgatcttgtcaggccagttagctttgttttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcag |
207 |
Q |
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| T |
43439668 |
tgatcttgtcaggcccgttatctttgttttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcag |
43439766 |
T |
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| Q |
208 |
gcctgatcggcaagcttgtctgcatttcatggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaa |
307 |
Q |
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| T |
43439767 |
gcctgatcagcaagcttgtctgcacttcatgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagca |
43439866 |
T |
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| Q |
308 |
atagttggttcagtgttaattgtgcttaaacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaata |
407 |
Q |
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| T |
43439867 |
ataattggttcagtgttaattgtgcttaaacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaata |
43439966 |
T |
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| Q |
408 |
taaagtatcacaaaaattcattttaaggctccttcc |
443 |
Q |
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| T |
43439967 |
taaagtatcacaagaactcattttaaggctccttcc |
43440002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 42 - 443
Target Start/End: Original strand, 43742134 - 43742534
Alignment:
| Q |
42 |
ttcatagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacattgatcttgtcaggccagttagctttgttttcaca |
141 |
Q |
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| T |
43742134 |
ttcatagagttgtaaaaccagaaagcatttttcttggtcaacctggaacaactgatctcataacattgatcttgtcaggcccgttatctttgttttcaca |
43742233 |
T |
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| Q |
142 |
taaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcatttcatggag |
241 |
Q |
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| T |
43742234 |
taaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcacttcatgcag |
43742332 |
T |
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| Q |
242 |
aatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgcttaaacttg |
341 |
Q |
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| T |
43742333 |
aatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgcttaaacttg |
43742432 |
T |
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| Q |
342 |
taatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaaggctcctt |
441 |
Q |
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| T |
43742433 |
taatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaaggctcctt |
43742532 |
T |
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| Q |
442 |
cc |
443 |
Q |
| |
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|| |
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| T |
43742533 |
cc |
43742534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 37949934 - 37949847
Alignment:
| Q |
45 |
atagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacattgatcttgtcaggccagttagctttg |
133 |
Q |
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| T |
37949934 |
atagagttgtaaaactataaa-cattttgcttcatcaacccagaacaactaatttcacatcattgatcttgtcaagctagttaactttg |
37949847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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