View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-15 (Length: 346)
Name: NF4718-Insertion-15
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-15 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 33637347 - 33637686
Alignment:
| Q |
7 |
accattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaac |
106 |
Q |
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| T |
33637347 |
accattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgttgcatagaagcttaatgtggaagaggacggggaaaaac |
33637446 |
T |
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| Q |
107 |
caagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatcatctctcctattatacataataatatcatca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
33637447 |
caagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctctatcatctctcctattatacatactaatatcatca |
33637546 |
T |
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| Q |
207 |
aaagctcctttgctagccatcaacatgacatttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcatagaaatacccaatt |
306 |
Q |
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| T |
33637547 |
aaagctcctttgctagccagcaacatgacatttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcacacaaatacccaatt |
33637646 |
T |
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| Q |
307 |
gaacatagctaacattcaccaatcgagtccaagactcttg |
346 |
Q |
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| T |
33637647 |
gaacatagctaacattcaccaatcgagtccaagactcttg |
33637686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 13732 - 13615
Alignment:
| Q |
31 |
tgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcag |
129 |
Q |
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| T |
13732 |
tgcacaacctaacataaattcagaaaaacaaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcag |
13633 |
T |
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| Q |
130 |
cataccaaatttggttgt |
147 |
Q |
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| T |
13632 |
cataacgaatttggttgt |
13615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 13465 - 13425
Alignment:
| Q |
306 |
tgaacatagctaacattcaccaatcgagtccaagactcttg |
346 |
Q |
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| T |
13465 |
tgaacatagctaacattcaccaactgagtccaagactcttg |
13425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 3838245 - 3838134
Alignment:
| Q |
37 |
acctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcatacc |
135 |
Q |
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| T |
3838245 |
acctaacataaattcagaaaaacaaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataac |
3838146 |
T |
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| Q |
136 |
aaatttggttgt |
147 |
Q |
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| T |
3838145 |
gaatttggttgt |
3838134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 3837980 - 3837944
Alignment:
| Q |
310 |
catagctaacattcaccaatcgagtccaagactcttg |
346 |
Q |
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| T |
3837980 |
catagctaacattcaccaactgagtccaagactcttg |
3837944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
69 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
168 |
Q |
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| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
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| Q |
169 |
ctttatcatctctcctattatacataata |
197 |
Q |
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| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
| Q |
77 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca |
176 |
Q |
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||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || || | |||| || ||||| |
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| T |
13784126 |
agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca |
13784225 |
T |
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| Q |
177 |
tctctcctattatacataataa |
198 |
Q |
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| T |
13784226 |
tctctccgattatacataataa |
13784247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
72 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
171 |
Q |
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|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
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| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
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| Q |
172 |
tatcatctctcctattatacataataa |
198 |
Q |
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| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 20475969 - 20476005
Alignment:
| Q |
310 |
catagctaacattcaccaatcgagtccaagactcttg |
346 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
20475969 |
catagctaacattcaccaaccgagtccaagactcttg |
20476005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 20475712 - 20475806
Alignment:
| Q |
39 |
ctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
132 |
Q |
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|||| ||||||||| ||| | ||| ||||||||||| | |||||||| |||| |||| | |||||||||||||||| |||||| |||| ||||| |
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| T |
20475712 |
ctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
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