View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-17 (Length: 266)
Name: NF4718-Insertion-17
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-17 |
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| [»] scaffold0178 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 40155485 - 40155586
Alignment:
| Q |
9 |
actgtatgttattattcaggctttccctctcaaaatggtatgttattattctattgaaactagagtaatttttatcataggttgtattgtatgttatttt |
108 |
Q |
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| T |
40155485 |
actgtatgttattattcaggctttccctctcaaaatggtatgttattattctattgaaactagagtaatttttatcataggttgtattgtatgttatttt |
40155584 |
T |
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| Q |
109 |
cg |
110 |
Q |
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|| |
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| T |
40155585 |
cg |
40155586 |
T |
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Target: scaffold0178 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 19228 - 19117
Alignment:
| Q |
142 |
catcgtggatgtgtgacatgtgaaataaattaaacaaagggctgagattaaaaacttag-nnnnnnncaatcttattactctcttgtatctgaaacaaca |
240 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | |
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| T |
19228 |
catcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaaga |
19129 |
T |
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| Q |
241 |
cacttgcctcct |
252 |
Q |
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| T |
19128 |
cacttgcctcct |
19117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 18514 - 18626
Alignment:
| Q |
128 |
tttacaccatttatcatcgtggatgtgtgacatgtgaaataaattaaacaaagggctgagattaaaaacttagnnnnnnncaatcttattactctcttgt |
227 |
Q |
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| T |
18514 |
tttacaccatttaccatcatggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaaccttag-aaaaaacaaacttgttactctcttgt |
18612 |
T |
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| Q |
228 |
atctgaaacaacac |
241 |
Q |
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| T |
18613 |
agctgaaacaacac |
18626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 41282659 - 41282790
Alignment:
| Q |
121 |
tgctccttttacaccatttatcatcgtggatgtgtgacatgtgaaataaattaaacaaagggctgagattaaaaacttagnnnnnnncaatcttattact |
220 |
Q |
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| T |
41282659 |
tgctccatttacaccatttaccatcatagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaacaatcttattact |
41282758 |
T |
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| Q |
221 |
ctcttgtatctgaaacaacacacttgcctcct |
252 |
Q |
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| T |
41282759 |
ttcttgtatctgaaacaacacatttgcctcct |
41282790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 41282991 - 41282879
Alignment:
| Q |
128 |
tttacaccatttatcatcgtggatgtgtgacatgtgaaataaattaaacaaagggctgagattaaaaacttagnnnnnnncaatcttattactctcttgt |
227 |
Q |
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|||||| |||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||| |||||||||||| |
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| T |
41282991 |
tttacatcatttaccatcatggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaaccttag-aaaaaacaaacttgttactctcttgt |
41282893 |
T |
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| Q |
228 |
atctgaaacaacac |
241 |
Q |
| |
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|||||||||||||| |
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| T |
41282892 |
atctgaaacaacac |
41282879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 48205015 - 48204973
Alignment:
| Q |
121 |
tgctccttttacaccatttatcatcgtggatgtgtgacatgtg |
163 |
Q |
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| T |
48205015 |
tgctccatttacaccatttaccatcatggatgtgtgacatgtg |
48204973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 31600474 - 31600516
Alignment:
| Q |
121 |
tgctccttttacaccatttatcatcgtggatgtgtgacatgtg |
163 |
Q |
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| T |
31600474 |
tgctccatttaccccatttatcatcatggatgtgtgacatgtg |
31600516 |
T |
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