View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-18 (Length: 171)
Name: NF4718-Insertion-18
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-18 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 2e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 40359562 - 40359450
Alignment:
| Q |
8 |
atattatcatagcaaatattgattggtgccatacatctttaataattaattcacttactaatacaaaaacaacagcaatccaattgttacaagtacaaca |
107 |
Q |
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| T |
40359562 |
atattatcatagcaaatattgattgatgccatgcatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttacaagtacaaca |
40359463 |
T |
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| Q |
108 |
atagtcaatccaa |
120 |
Q |
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| T |
40359462 |
atagtcaatccaa |
40359450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 40363758 - 40363690
Alignment:
| Q |
12 |
tatcatagcaaatattgattggtgccatacatctttaataattaattcacttactaatacaaaaacaaca |
81 |
Q |
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| T |
40363758 |
tatcatagcaaatattg-ttgatgtcatacatctttaataaccaatgctcttattaatacaaaaacaaca |
40363690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 40363656 - 40363623
Alignment:
| Q |
84 |
aatccaattgttacaagtacaacaatagtcaatc |
117 |
Q |
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| T |
40363656 |
aatcctattgttacaagtacaacaatagtcaatc |
40363623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 11346731 - 11346656
Alignment:
| Q |
38 |
atacatctttaataattaattcacttactaatacaaaaacaacagcaatccaattgttacaagtacaacaatagtc |
113 |
Q |
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|||||||||||||||| ||||| |||| ||| ||||||| ||| ||||| |||||||||||||| | ||||||| |
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| T |
11346731 |
atacatctttaataatcaattcccttattaacacaaaaaagacaataatcctattgttacaagtactaaaatagtc |
11346656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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