View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-19 (Length: 848)
Name: NF4718-Insertion-19
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-19 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 332 - 762
Target Start/End: Original strand, 51900902 - 51901332
Alignment:
| Q |
332 |
taatatcaaaaagtattggattgagtttcaataaatacaaaatattattcaataaatcatggtccaacaccaagatctcaagaatccaataaatacaaaa |
431 |
Q |
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| T |
51900902 |
taatatcaaaaagtattggattgagtttcaataaatacaaaatattattcaataaatcatggtccaacaccaagatctcaagaatccaataaatacaaaa |
51901001 |
T |
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| Q |
432 |
tattattattctttaaaggaagtattagtaaccttcaagtaaagtaaagtaggataaaaaattggtcctatagtgaaacacccatacattttcccttgtg |
531 |
Q |
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| T |
51901002 |
tatt---attctttaaaggaagtattagtaaccttcaagtaaagtaaagtaggataaaaaattggtcctatagtgaaacacccatacattttcccttgtg |
51901098 |
T |
|
| Q |
532 |
gaaataatatttgaaaaccaaattggattagttaaacattcatccatctctattgcctcggaaatttagccccaattat----cgaacatcaagctagtc |
627 |
Q |
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| T |
51901099 |
gaaataatatttgaaaaccaaattggattagttaaacatttatccatctctattgcctcagaaatttagccccaattatcgaacgaacatcaagctagtc |
51901198 |
T |
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| Q |
628 |
aactagtattttacttaacggaatccatcattcatgggtcaccgaaataattttccatcatgcactttgttcaaaaaattagtttaccaaacccctcttt |
727 |
Q |
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| T |
51901199 |
aactagtatcttacttaacggaatccatcattcatgggtcaccgaaataattttccatcatgcactttgttcaaaaaattagtttaccaaacccctc-tt |
51901297 |
T |
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| Q |
728 |
aacttacaatgctctcatgaagttaatctgcattc |
762 |
Q |
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| T |
51901298 |
aacttacaatgctcttatgaagttaatctgcattc |
51901332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 51900502 - 51900795
Alignment:
| Q |
7 |
ataggtagcagttgttttaaaatttaaacagtcaatatcacgtttcaagtatctaattataattatccgcttagtttgacacgtttccggaaaattttgt |
106 |
Q |
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| T |
51900502 |
ataggtagcagttgttttaaaatttaaacagtcaatatcacgtttcaagtatctaattataattatccgcttagtttgacacgtttccggaaaattttgt |
51900601 |
T |
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| Q |
107 |
gaaacaacatgtggatcatcattttatttcaccataaacccccaagtacaagtatannnnnnnnnnnnnnnnnnataaaactgcctaatatgatgtgagt |
206 |
Q |
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| T |
51900602 |
gaaacaacatgtggatcatcattttatttcaccataaaccccgaagtacaagtata-tatatatttttttatttataaaactgcctaatatgatgtgagt |
51900700 |
T |
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| Q |
207 |
tttatggtgaggtgtgtatcatgtgaactagactttgatcaatgtttgaaattcgcttataactatgatgacaacacaacaacaggtcatgctctcac |
304 |
Q |
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| T |
51900701 |
tttatggtgaggtgtttatcatgtgaactagattttgatcaatgtttgaaattcgtttataactatgatgacaac---acaacaggtcatgctctcac |
51900795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 784 - 823
Target Start/End: Original strand, 51901393 - 51901432
Alignment:
| Q |
784 |
taagactgaactttttaagatcacaaattttctactaata |
823 |
Q |
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| T |
51901393 |
taagactgaactttttaagatcacaaattttctactaata |
51901432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 51900808 - 51900843
Alignment:
| Q |
299 |
tctcactaagacaatgactcaatctctgttggttaa |
334 |
Q |
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| T |
51900808 |
tctcactaagacaatgactcaatctttgttggttaa |
51900843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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