View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4718-Insertion-3 (Length: 906)
Name: NF4718-Insertion-3
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 639
Target Start/End: Original strand, 6333335 - 6333967
Alignment:
| Q |
9 |
tatacacatctgaatgctacatcctattctagatttccttctctctctctacgcctacctcagtgccttgttcattctcctctctccatgccagagttgt |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333335 |
tatacacatatgaatgctacatcctattctagattttcttctctctctctacgcctacctcagtgccttgttcattctcctctctccatgccagagttgt |
6333434 |
T |
|
| Q |
109 |
tcatcatttccgctgagactgtgttaaacnnnnnnnn-----tcaccactgaaatcatcnnnnnnnaacaaaaggaagaaaatactggattcatctttga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6333435 |
tcatcatttccgctgagactgtgttaaacaaaaaaaaaaaaatcaccactgaaatcatctttttttaacaaaaggaagaaaatactggattcatctttga |
6333534 |
T |
|
| Q |
204 |
cacaaggctggannnnnnncaacctttctcttagaatccatcggttgcatgtcattaacaaatattaaaatgggcatctcttccccttttccacaaaatt |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333535 |
cacaaggctggatttttttcaacctttctcttagaatccatcggttgcgtgtcattaacaaatattaaaatgggcatctcttccccttttccacaaaatt |
6333634 |
T |
|
| Q |
304 |
ccaattttcacgtttatgcacnnnnnnnnnnnnnctatatgaannnnnnncaataatttagtgtcgtcttgtttgatttttaattactctttcatgattt |
403 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333635 |
ccaattttcacgtttatgcacttttattttttt-ctatatgaatttttttcaataattcagtgttgtcttgtttgatttttaattactctttcatgattt |
6333733 |
T |
|
| Q |
404 |
tgttcaaaagagtggtgttacatgaataaaatataacaagtggttgaattttttccttatttctcaagatttgtaaatatttcatcttttaagacactca |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333734 |
tgttcaaaagagtggtgttacatgaataaaatataacaagtggttgaattttttcc-tatttctcaagatttgtaaatatttcatcttttaagacactca |
6333832 |
T |
|
| Q |
504 |
gattgtaattcctctcttcttcttcttcttcctcaannnnnnnnnnnngtgaatccaacaaaatcaagaagcataaaatgtaaacatgaacccaaaaaga |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333833 |
gattgtaattcctctcttcttcttcttcttcctcaa-ttttttttattgtgaatccaacaaaatcaagaagcataaaatgtaaacatgaacccaaaaaga |
6333931 |
T |
|
| Q |
604 |
agaatcaaacagaatggtaaggttcacaatccatcc |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333932 |
agaatcaaacagaatggtaaggttcacaatccatcc |
6333967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 718 - 906
Target Start/End: Original strand, 6334056 - 6334244
Alignment:
| Q |
718 |
cgttcttcggacggtgaatgctgatggaaagagaatgtaaccagtgggtgtgagtcccaaca-tggagagaaagtcagaaggatgagacagaatcaaaag |
816 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6334056 |
cgttcttcggacggtgagtgctgatggaaagagaatgtaaccagtag-tgtgagtcccaacaatggagagagagtcagaaggatgagacagaatcaaaag |
6334154 |
T |
|
| Q |
817 |
aaaataggaagataaaataattaaaatatatagtgtatgatgctcatgatggtgtattataatcaaacggaccagattactcactcccca |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6334155 |
aaaataggaagataaaataattaaaatatatagtgtataatgttcatgatggtgtattataatcaaacggaccagattactcactcccca |
6334244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 6 - 639
Target Start/End: Complemental strand, 49406747 - 49406113
Alignment:
| Q |
6 |
cactatacacatctgaatgctacatcctattctagatttccttctctctctctacgcctacctcagtgccttgttcattctcctctctccatgccagagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49406747 |
cactatacacatctgaatgctacatcctattctagagttccttctctctctctacgcctacctcagtgccttgttcattctcctctctccatgccagagt |
49406648 |
T |
|
| Q |
106 |
tgttcatcatttccgctgagactgtgttaaacnnnnnnnn-tcaccactgaaatcatcnnnnnnnaacaaaa----ggaagaaaatactggattcatctt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
49406647 |
tgttcatcattttcgctgagactgtgttaaacaaacaaaaatcaccactgaaatcatctttttttaacaaaattaaggaagaaaatactggattcatctt |
49406548 |
T |
|
| Q |
201 |
tgacacaaggctggannnnnnncaacctttctcttagaatccatcggttgcatgtcattaacaaatattaaaatgggcatctcttccccttttccacaaa |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49406547 |
tgacacaaggctggatttttttcaacctttctcttagaatccatcggttgcatgtcattaacaaatattaaaatgggcatctcttcctcttttccacaaa |
49406448 |
T |
|
| Q |
301 |
attccaattttcacgtttatgcacnnnnnnnnnnnnn---ctatatgaannnnnnncaataatttagtgtcgtcttgtttgatttttaattactctttca |
397 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
49406447 |
attccaattttcacgtttatgcacttttatttttttttttctatatgaatttttttcaataatttagtgttgtcttgtttgatttttaattactgtttca |
49406348 |
T |
|
| Q |
398 |
tgattttgttcaaaagagtggtgttacatgaataaaatataacaagtggttgaattttttccttatttctcaagatttgtaaatatttcatcttttaaga |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49406347 |
tgattttgttcaaaagagtggtgttacatgaataaaatataacaagtggttgaattttttcc-tatttctcaagatttgtaaatatttcatcttttaaga |
49406249 |
T |
|
| Q |
498 |
cactcagattgtaattcctctcttcttcttcttcttcctcaannnnnnnnnnnngtgaatccaacaaaatcaagaagcataaaatgtaaacatgaaccca |
597 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49406248 |
cactcagattgtaattcctc------tcttcttcttcctcaattttttttttttgtgaatccaacaaaatcaagaagcataaaatgtaaacatgaaccca |
49406155 |
T |
|
| Q |
598 |
aaaagaagaatcaaacagaatggtaaggttcacaatccatcc |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49406154 |
aaaagaagaatcaaacagaatggtaaggttcacaatccatcc |
49406113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 719 - 906
Target Start/End: Complemental strand, 49406029 - 49405842
Alignment:
| Q |
719 |
gttcttcggacggtgaatgctgatggaaagagaatgtaaccagtgggtgtgagtcccaaca-tggagagaaagtcagaaggatgagacagaatcaaaaga |
817 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49406029 |
gttcttcggatggtgagtgctgatggaaagagaatgtaactagtgg-tgtgagttccaacaatggagagagagtcagaaggatgagacagaatcaaaaga |
49405931 |
T |
|
| Q |
818 |
aaataggaagataaaataattaaaatatatagtgtatgatgctcatgatggtgtattataatcaaacggaccagattactcactcccca |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49405930 |
aaataggaagataaaataattaaaatatatagtgtataatattcatgatggtgtattataatcaaacggaccagattactcactcccca |
49405842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University