View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4718-Insertion-4 (Length: 764)

Name: NF4718-Insertion-4
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4718-Insertion-4
NF4718-Insertion-4
[»] chr2 (18 HSPs)
chr2 (8-319)||(27896318-27896629)
chr2 (342-552)||(27896629-27896839)
chr2 (681-759)||(27897729-27897807)
chr2 (630-685)||(27897447-27897502)
chr2 (146-251)||(1870509-1870613)
chr2 (186-251)||(18717883-18717948)
chr2 (153-249)||(36622103-36622199)
chr2 (147-251)||(40574158-40574262)
chr2 (153-232)||(4978786-4978865)
chr2 (153-232)||(4996694-4996773)
chr2 (148-250)||(41436320-41436422)
chr2 (156-252)||(43131773-43131869)
chr2 (146-233)||(21646511-21646596)
chr2 (166-265)||(43248714-43248813)
chr2 (147-233)||(8580506-8580592)
chr2 (132-258)||(19994926-19995052)
chr2 (186-251)||(7932906-7932971)
chr2 (166-251)||(17641187-17641272)
[»] chr6 (8 HSPs)
chr6 (153-270)||(10008193-10008309)
chr6 (153-251)||(5611144-5611242)
chr6 (185-251)||(28048756-28048822)
chr6 (153-274)||(19418595-19418716)
chr6 (153-219)||(27082311-27082377)
chr6 (153-270)||(11101900-11102017)
chr6 (148-233)||(17835009-17835094)
chr6 (128-212)||(31223170-31223255)
[»] scaffold0299 (1 HSPs)
scaffold0299 (147-251)||(18031-18136)
[»] chr7 (17 HSPs)
chr7 (128-249)||(16979917-16980038)
chr7 (152-270)||(11740357-11740475)
chr7 (153-251)||(23142668-23142766)
chr7 (171-242)||(34993152-34993223)
chr7 (153-232)||(37928300-37928379)
chr7 (153-251)||(31487725-31487823)
chr7 (153-251)||(16685731-16685831)
chr7 (153-251)||(17659967-17660067)
chr7 (187-251)||(19677029-19677093)
chr7 (147-251)||(24937826-24937929)
chr7 (166-233)||(1703907-1703974)
chr7 (186-233)||(18221019-18221066)
chr7 (166-232)||(45907068-45907134)
chr7 (186-251)||(8656328-8656393)
chr7 (166-251)||(8896613-8896698)
chr7 (153-230)||(30027964-30028041)
chr7 (185-246)||(47537457-47537518)
[»] chr5 (10 HSPs)
chr5 (145-233)||(2611182-2611269)
chr5 (148-251)||(6102824-6102926)
chr5 (147-249)||(1447571-1447673)
chr5 (186-248)||(30840616-30840678)
chr5 (146-240)||(7609566-7609659)
chr5 (153-251)||(36482052-36482149)
chr5 (211-252)||(1920760-1920801)
chr5 (166-251)||(11815924-11816009)
chr5 (163-232)||(21052662-21052731)
chr5 (186-251)||(30293838-30293903)
[»] chr3 (15 HSPs)
chr3 (147-251)||(48338807-48338911)
chr3 (166-249)||(20585818-20585901)
chr3 (146-233)||(44291263-44291349)
chr3 (153-251)||(55446733-55446830)
chr3 (153-249)||(45054387-45054483)
chr3 (163-242)||(35322019-35322097)
chr3 (186-248)||(29032445-29032507)
chr3 (185-251)||(41287898-41287964)
chr3 (153-251)||(49261780-49261878)
chr3 (162-242)||(15671141-15671221)
chr3 (146-233)||(42163640-42163726)
chr3 (165-232)||(54801364-54801431)
chr3 (147-228)||(635743-635824)
chr3 (147-236)||(38359041-38359130)
chr3 (164-233)||(43862952-43863021)
[»] chr4 (14 HSPs)
chr4 (147-250)||(27284066-27284169)
chr4 (155-251)||(51100041-51100138)
chr4 (156-232)||(12094961-12095037)
chr4 (166-232)||(19480550-19480616)
chr4 (153-251)||(20775072-20775170)
chr4 (186-231)||(44639901-44639946)
chr4 (195-251)||(4860159-4860215)
chr4 (183-251)||(34341452-34341520)
chr4 (187-251)||(45921354-45921418)
chr4 (185-251)||(16831116-16831182)
chr4 (186-252)||(42595198-42595264)
chr4 (153-242)||(16341126-16341215)
chr4 (163-236)||(31647731-31647804)
chr4 (185-246)||(55090812-55090873)
[»] chr1 (15 HSPs)
chr1 (147-249)||(26829486-26829588)
chr1 (183-265)||(11802938-11803020)
chr1 (183-249)||(48502596-48502662)
chr1 (185-250)||(28490665-28490730)
chr1 (144-247)||(52429619-52429722)
chr1 (185-251)||(27530-27596)
chr1 (173-251)||(10226477-10226555)
chr1 (166-232)||(27688492-27688558)
chr1 (185-251)||(31160758-31160824)
chr1 (163-233)||(50127381-50127451)
chr1 (187-232)||(8001781-8001826)
chr1 (166-251)||(11449073-11449158)
chr1 (153-242)||(15419675-15419763)
chr1 (185-218)||(27908951-27908984)
chr1 (147-220)||(34347556-34347629)
[»] scaffold0039 (1 HSPs)
scaffold0039 (148-251)||(30002-30105)
[»] chr8 (15 HSPs)
chr8 (153-251)||(35901431-35901529)
chr8 (153-233)||(600372-600452)
chr8 (155-251)||(18200696-18200792)
chr8 (147-251)||(20542381-20542485)
chr8 (186-246)||(27506966-27507026)
chr8 (187-251)||(40607332-40607396)
chr8 (147-251)||(44648953-44649057)
chr8 (166-265)||(1988793-1988892)
chr8 (196-251)||(12201835-12201890)
chr8 (196-251)||(12446263-12446318)
chr8 (153-268)||(18131192-18131306)
chr8 (147-221)||(23725670-23725744)
chr8 (153-219)||(37530004-37530070)
chr8 (186-251)||(3137433-3137498)
chr8 (187-232)||(3347545-3347590)
[»] scaffold0079 (1 HSPs)
scaffold0079 (153-242)||(51646-51735)
[»] scaffold0036 (1 HSPs)
scaffold0036 (186-251)||(36565-36630)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 27896318 - 27896629
Alignment:
Q  8 acatctccattaatttctaacttaaagtaaaatttacagcaacgtacaacccgtgcagagacatggatattttactagttttaataataggtgtaaacct 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27896318 acatttccattaatttctaacttaaagtaaaatttacagcaacgtacaacccgtgcagagacatggatattttactagttttaataataagtgtaaacct 27896417  T
Q  108 atctaaaaatatttatgagtatgctaaccggtgttcttggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattact 207  Q
    || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  27896418 atttaaaaatatttatgagtatgctaaccggtgtttttgaggcagtggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattact 27896517  T
Q  208 aaatcaaaagtaacagcttatatttctaaaacaaattttctattcttggataccttaatcagtacccggaaacaccggttagtaaaatccaaatatttat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  27896518 aaatcaaaagtaacagcttatatttctaaaacaaattttctattcttggataccttaatcagtacccggaaacactggttagcaagatccaaatatttat 27896617  T
Q  308 aataaactgaca 319  Q
    || |||||||||    
T  27896618 aacaaactgaca 27896629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 342 - 552
Target Start/End: Original strand, 27896629 - 27896839
Alignment:
Q  342 acaaattggagggaatttcatatggtattcctcaatcatattgatcatagttacctggtctttaaggttagaaattttataaaaaagaaattgggctaag 441  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||    
T  27896629 acaaattggagggaatttcatatggtattcctcaatgatattgatcatagttagctggtctttaagattagaaattttatgaaaaagaaattgggcttag 27896728  T
Q  442 gagtcaccatcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaa 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27896729 gagtcaccatcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaa 27896828  T
Q  542 ctataactcat 552  Q
    |||||||||||    
T  27896829 ctataactcat 27896839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 681 - 759
Target Start/End: Original strand, 27897729 - 27897807
Alignment:
Q  681 actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt 759  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27897729 actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt 27897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 685
Target Start/End: Original strand, 27897447 - 27897502
Alignment:
Q  630 ggacattacatgtgaatattgtttttatatgttttaatcaatttttgattcactat 685  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  27897447 ggacattacatgtgaatattgtttttatatgtctgaatcaatttttgattcactat 27897502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 1870613 - 1870509
Alignment:
Q  146 ggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattt 245  Q
    |||||| ||||||| |||| |||| |||||| | || || ||||| | |||||||||||||| |||||||||| | |||||||||||  || ||||||||    
T  1870613 ggggcattggttaagcaacaaaaacaagtaactttttataaaaaaat-gtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattt 1870515  T
Q  246 tctatt 251  Q
    ||||||    
T  1870514 tctatt 1870509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 18717883 - 18717948
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||| ||||| ||| ||||||||    
T  18717883 aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatt 18717948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 36622103 - 36622199
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttcta 249  Q
    |||||||  ||| |||||| |||||  || |||||||||||||||||| |||| | | |||||||||| || |||||||||||| |||| |||||||    
T  36622103 tggttaagtaactaaaagaggtaagattttattaaaaagttgtgtaataattagttagtcaaaagtaatagtttatatttctaagacaatttttcta 36622199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 40574262 - 40574158
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| ||||||| || |||||| |||||  | || || ||||||||||||||||||||||  ||||||||| |||  ||||||||| || ||||| |||    
T  40574262 gggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaattt 40574163  T
Q  247 ctatt 251  Q
    |||||    
T  40574162 ctatt 40574158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 4978865 - 4978786
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||| |||||| || ||||| || || |||| |||||||||| ||||||  ||||||||||||| |||||||||    
T  4978865 tggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattt 4978786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 4996773 - 4996694
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||| |||||| || ||||| || || |||| |||||||||| ||||||  ||||||||||||| |||||||||    
T  4996773 tggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattt 4996694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 41436320 - 41436422
Alignment:
Q  148 ggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttc 247  Q
    |||| ||||||| || |||||| |||||||| || || ||||||||||||||| |||| |  ||||||| ||||| |||||| |||||| | ||| ||||    
T  41436320 ggcaatggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaatttc 41436419  T
Q  248 tat 250  Q
    |||    
T  41436420 tat 41436422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 43131869 - 43131773
Alignment:
Q  156 ttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    |||||||||||||| |||||||| || || |||| || ||||||||||||||  ||||||||||  | |||| |||| ||| ||||| ||| |||||    
T  43131869 ttaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttattc 43131773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 21646596 - 21646511
Alignment:
Q  146 ggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||| |||||||||| ||||| ||||||||| || ||||||||||  ||||||||||||| ||| |||||| |||  |||||||||    
T  21646596 ggggcattggttaaaca-ccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacactttatatttc 21646511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 43248714 - 43248813
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattcttggataccttaa 265  Q
    ||||||||||||  || || ||||| | ||||||| |||| |   ||||||||||||| |||||||||||| |||| ||||||| | |||||| ||||||    
T  43248714 aaaagaagtaagattttatcaaaaattggtgtaataattagttggtcaaaagtaacagtttatatttctaagacaatttttctacttttggattccttaa 43248813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 8580506 - 8580592
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    ||||| ||||||| || |||||  |||| ||| || || |||||  ||| ||||||||||| |||||||||||||| ||||||||||    
T  8580506 gggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaagtaacatcttatatttc 8580592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 19995052 - 19994926
Alignment:
Q  132 taaccggtgttcttggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatt 231  Q
    ||||||||||||  ||||||  |||||| ||   |||||| |||||  || ||||||||||  |||||| |||| | | ||||||||||||| |||||||    
T  19995052 taaccggtgttcccggggcatcggttaagcagttaaaagaggtaagcatttattaaaaagtgatgtaataattagttagtcaaaagtaacagtttatatt 19994953  T
Q  232 tctaaaacaaattttctattcttggat 258  Q
    || || | || ||||||||| ||||||    
T  19994952 tccaagataatttttctatttttggat 19994926  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 7932971 - 7932906
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||||| ||| ||||||  ||| ||||||| | |||| |||||||||||||| ||||||||    
T  7932971 aaaaagttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatt 7932906  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 17641187 - 17641272
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||| |||||||| || ||| |||||||||| ||| ||| ||  |||||||||||||  ||||||||| |||||||| ||| ||||    
T  17641187 aaaataagtaagttttcattgaaaagttgtgcaataatttctttatcaaaagtaacattttatatttcaaaaacaaagtttttatt 17641272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 10008193 - 10008309
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    ||||||| |||||||||||||||||| || |||||||||| ||||||||||||||  |||||||||||| | |||||||| ||| ||||| ||||| ||     
T  10008193 tggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct-ttt 10008291  T
Q  253 ttggataccttaatcagt 270  Q
    || ||| |||||||||||    
T  10008292 ttagattccttaatcagt 10008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 5611242 - 5611144
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| |||||| |||||||| || || || ||||||| ||||||||| |  || |||||||||| ||||||||||||| ||||| ||||||||    
T  5611242 tggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctatt 5611144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 28048822 - 28048756
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||| |||||||||||||| ||| |||||| | | ||||||||| ||||||||||||||||||    
T  28048822 taaaaagtggtgtaattattacttaattaaaagtcaaaacttatatttttaaaacaaattttctatt 28048756  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 19418595 - 19418716
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    ||||||| || ||||||||||||||  || ||||||||||  |||||| ||||     ||||||||||||| |||||||| ||| |||| |||| || |     
T  19418595 tggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataattagctggtcaaaagtaacagtttatatttttaagacaatttttttactt 19418694  T
Q  253 ttggataccttaatcagtaccc 274  Q
    |||||| |||||| ||||||||    
T  19418695 ttggattccttaaccagtaccc 19418716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 27082311 - 27082377
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagta 219  Q
    ||||||||||||||||| |||||| | || || ||||||||||||||| |||| |  ||||||||||    
T  27082311 tggttaaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgatcaaaagta 27082377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 11101900 - 11102017
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    ||||||| |||| |||||| |||||  || |||||||||| || |||| |||| | | ||||||||||| | |||||||| ||| | || ||||||| |     
T  11101900 tggttaagcaactaaaagaggtaagattttattaaaaagtagtttaataattagttagtcaaaagtaactgtttatatttttaagataatttttctactt 11101999  T
Q  253 ttggataccttaatcagt 270  Q
    |||||| |||||| ||||    
T  11102000 ttggattccttaaccagt 11102017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 17835094 - 17835009
Alignment:
Q  148 ggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||| ||||||||||  ||||| ||| |||| || || ||||| | || ||||||||||| |||||||||||| | ||||||||||    
T  17835094 ggcattggttaaacattcaaaacaagcaagttttcatgaaaaaatcgtataattattacttaatcaaaagtaatatcttatatttc 17835009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 31223170 - 31223255
Alignment:
Q  128 atgctaaccggtgttcttggggcagtggttaaacaaccaaaagaagtaagtcttaat-taaaaagttgtgtaattattactaaatc 212  Q
    ||||||||||||| ||   ||||| |||||||||| |||||| |||||||| || ||  ||||||||||||||| |||||| ||||    
T  31223170 atgctaaccggtgctccaagggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatcattacttaatc 31223255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 18136 - 18031
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaa-gttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattt 245  Q
    ||||| ||||||| ||||||||| |||||| | || || ||||| ||||||||||||||||| |||||||||| | | ||||||||| ||| | ||||||    
T  18136 gggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattt 18037  T
Q  246 tctatt 251  Q
    ||||||    
T  18036 tctatt 18031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 16979917 - 16980038
Alignment:
Q  128 atgctaaccggtgttcttggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagctta 227  Q
    |||||||| |||| |||  ||||| ||||||| || |||||| |||||| | || || |||||||||||| |||||||||  ||||||||||||| ||||    
T  16979917 atgctaactggtgctctaagggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatctta 16980016  T
Q  228 tatttctaaaacaaattttcta 249  Q
    |||||  || ||||| ||||||    
T  16980017 tattttcaagacaaaatttcta 16980038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 11740475 - 11740357
Alignment:
Q  152 gtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||| ||  ||||||||||||   || |||||||||| ||||||| |||| |  |||||||||||||| ||||||||  || |||| |||||||||    
T  11740475 gtggttaagcaggcaaaagaagtaaaattttattaaaaagtggtgtaataattagttgatcaaaagtaacagtttatattttcaagacaatttttctatt 11740376  T
Q  252 cttggataccttaatcagt 270  Q
     || ||| |||||||||||    
T  11740375 attagattccttaatcagt 11740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 23142766 - 23142668
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaa-gttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| |||||| |||||||| || || ||||| |||||||||| ||||||  ||||||| ||||| ||||||||||  ||||||| ||||||||    
T  23142766 tggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataacatcttatatttc-caaacaaaatttctatt 23142668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 34993223 - 34993152
Alignment:
Q  171 aagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||| || || |||||||||||||||||||| |  ||||||||||||| ||||||||| ||| |||||    
T  34993223 aagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaa 34993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 37928300 - 37928379
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||| |||||| |||||||| || || ||||||||||||||| ||||||  ||||||| |||||  ||||||||    
T  37928300 tggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattt 37928379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 31487823 - 31487725
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| |||||| || ||||| || |  ||||| |||||||||||||||| ||| |||| ||||| |||||||||| || | ||| ||||||||    
T  31487823 tggttaaacatccaaaataaataagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttctatt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 16685731 - 16685831
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaatt-aaaaagttgtgtaattattactaaatcaaa-agtaacagcttatatttctaaaacaaattttctat 250  Q
    ||||||| || |||||| |||||||| || ||| ||||||||||||||| ||||||  |||||| ||||||| |||||||||| || |||||  ||||||    
T  16685731 tggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctat 16685830  T
Q  251 t 251  Q
    |    
T  16685831 t 16685831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 17659967 - 17660067
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaatt-aaaaagttgtgtaattattactaaatcaaa-agtaacagcttatatttctaaaacaaattttctat 250  Q
    ||||||| || |||||| |||||||| || ||| ||||||||||||||| ||||||  |||||| ||||||| |||||||||| || |||||  ||||||    
T  17659967 tggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctat 17660066  T
Q  251 t 251  Q
    |    
T  17660067 t 17660067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 19677029 - 19677093
Alignment:
Q  187 aaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||| |||||||| |||||| |||||||||||||| |||||||||  || ||||| ||||||||    
T  19677029 aaaaggtgtgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttctatt 19677093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 24937826 - 24937929
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| |||||||  |||||||| |||||| | || || ||||||| |||||||||||||| ||| |||||| | |   ||||||| |||||||||||||    
T  24937826 gggcattggttaaggaaccaaaataagtaactttttat-aaaaagtggtgtaattattacttaattaaaagtcaaaatctatatttttaaaacaaatttt 24937924  T
Q  247 ctatt 251  Q
    |||||    
T  24937925 ctatt 24937929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 1703974 - 1703907
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||| |||||  || |||||||||||||||||| |||| | | ||||||||||||| |||||||||    
T  1703974 aaaagaggtaagattttattaaaaagttgtgtaataattagttagtcaaaagtaacagtttatatttc 1703907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 18221066 - 18221019
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||||||| ||||||||||| ||||||| |||||| ||||||||||    
T  18221066 aaaaagttgtataattattacttaatcaaatgtaacatcttatatttc 18221019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 45907134 - 45907068
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    ||||||||||||| || ||||||||||  |||||||||||||  || |||||| |||| ||||||||    
T  45907134 aaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatattt 45907068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 8656328 - 8656393
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| || ||||||||||| |||||||||| | | ||||| ||| ||| ||||||||||||||    
T  8656328 aaaaagtggtataattattacttaatcaaaagttaaaacttatttttttaagacaaattttctatt 8656393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 8896698 - 8896613
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||| |||||||| || || ||||| ||||||||| |||||   ||||||||||||| ||||||||| ||| ||||| ||| ||||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatt 8896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 30027964 - 30028041
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatat 230  Q
    |||||||||| ||| || |||||||  || || |||||||||||| || ||||||  ||||||||||||| |||||||    
T  30027964 tggttaaacatccataacaagtaagatttcatgaaaaagttgtgtgatcattactttatcaaaagtaacatcttatat 30028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 47537457 - 47537518
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||||||||||||||||||||| |||||||| | | | |||||||||  || |||||||||    
T  47537457 taaaaagttgtgtaattattacttaatcaaaaatcaaaacttatattttcaagacaaatttt 47537518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 2611269 - 2611182
Alignment:
Q  145 tggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    ||||||| ||||||| || ||||| ||||||||| || ||||||||||  ||||||||||||| ||| |||||| ||||||||||||||    
T  2611269 tggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttc 2611182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 6102824 - 6102926
Alignment:
Q  148 ggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttc 247  Q
    |||| ||||||| ||||||||| |||||| | || ||||||| ||  ||||||||||||| |||||||||| | | |||||||||  || ||||||||||    
T  6102824 ggcattggttaagcaaccaaaataagtaactttttattaaaa-gtattgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttc 6102922  T
Q  248 tatt 251  Q
    ||||    
T  6102923 tatt 6102926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 1447673 - 1447571
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| ||||||| |||| |||| |||||||| || | | |||||| ||||||||||||||   ||||  ||||||||||||||||| |||| ||| |||    
T  1447673 gggcattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaactgtaacagcttatatttccaaaataaaattt 1447574  T
Q  247 cta 249  Q
    |||    
T  1447573 cta 1447571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 30840678 - 30840616
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttct 248  Q
    ||||||||||||||| ||||||  ||||||||||||| |||||||||  || |||||||||||    
T  30840678 aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttct 30840616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 7609659 - 7609566
Alignment:
Q  146 ggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaaca 240  Q
    |||||| ||||||| || ||||||||||||||| || ||||||||||  |||||||||||||  || |||| | | || ||||||||| ||||||    
T  7609659 ggggcattggttaagca-ccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgatagtttatatttccaaaaca 7609566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 36482052 - 36482149
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| | |||| || ||||| || || ||||||||||||||  |||| |  ||||||||||||| |||||||||  |||||||| ||||||||    
T  36482052 tggttaaacatctaaaataa-taagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatt 36482149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 1920801 - 1920760
Alignment:
Q  211 tcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  1920801 tcaaaagtaacaccttatatttctaagacaaaatttctattc 1920760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 11815924 - 11816009
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||| |||||||| || || |||||  |||||||| ||||||  ||||||||||||| |||||||||  || ||||| ||||||||    
T  11815924 aaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatt 11816009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 21052731 - 21052662
Alignment:
Q  163 accaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||||||||| || |||||||| |  |||||||||||||  || |||||| |||| ||||||||    
T  21052731 accaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatattt 21052662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 30293903 - 30293838
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||| || |||||| ||||||  ||||||||||||| ||||||||| ||| ||||| ||||||||    
T  30293903 aaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatt 30293838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 48338807 - 48338911
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| ||||||| || |||||| |||||||| || || ||||||||||||||| ||||||  ||||||| ||||| |||||||||| || | ||| |||    
T  48338807 gggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaattt 48338906  T
Q  247 ctatt 251  Q
    |||||    
T  48338907 ctatt 48338911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 20585818 - 20585901
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttcta 249  Q
    |||||| |||||  || |||||||||| ||||||| |||| | ||||||||||||||| ||||||||| ||||||| |||||||    
T  20585818 aaaagaggtaagattttattaaaaagtggtgtaataattagttaatcaaaagtaacagtttatatttccaaaacaatttttcta 20585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 44291349 - 44291263
Alignment:
Q  146 ggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||| ||||||| || ||||||||||||||| || ||||||||||  ||||||||||||| ||| |||||| |||| |||||||||    
T  44291349 ggggcattggttaagca-ccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttc 44291263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 55446733 - 55446830
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| | ||||||||||||| || || ||||||||||||||| ||||||  || |||||||||| |||||||||| || ||||| ||| ||||    
T  55446733 tggttaaacatctaaaagaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatt 55446830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 45054387 - 45054483
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttcta 249  Q
    ||||||||||   ||||||||||||  || |||||||| | ||||||| |||| | | ||||||||||||| |||||||||||| |||| |||||||    
T  45054387 tggttaaacagttaaaagaagtaagattttattaaaaaatagtgtaataattagttagtcaaaagtaacagtttatatttctaacacaatttttcta 45054483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 35322019 - 35322097
Alignment:
Q  163 accaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||||||||||| || ||||||||||  ||||||||||||| ||| |||||| | || |||||||||||| |||||    
T  35322019 accaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaagacaaa 35322097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 29032445 - 29032507
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttct 248  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||| ||| ||||| |||||    
T  29032445 aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttct 29032507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 41287964 - 41287898
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||| | |||||||||||||| |||||||| | | | ||||||||| ||||||||||||||||||    
T  41287964 taaaaaatagtgtaattattacttaatcaaaaatcaaaacttatatttttaaaacaaattttctatt 41287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 49261780 - 49261878
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| || |||||| |||||  | || || ||||| ||||||||||||||||  ||||||||||||| |||||||||  || ||||| ||||||||    
T  49261780 tggttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatt 49261878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 15671221 - 15671141
Alignment:
Q  162 aaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    ||||||| ||||||||| || ||||||||||  |||||||||||||  || |||||| |||| ||||||||| || |||||    
T  15671221 aaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagacaaa 15671141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 42163726 - 42163640
Alignment:
Q  146 ggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||| |||||| ||| ||||| ||||||||| || ||||||||||  ||||||||||||| ||| |||||| || | |||||||||    
T  42163726 ggggcattggttacaca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacggtttatatttc 42163640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 54801431 - 54801364
Alignment:
Q  165 caaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    ||||| |||||||| || || ||||| ||||||||||||||||  | ||||||||||| |||||||||    
T  54801431 caaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattt 54801364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 635824 - 635743
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttat 228  Q
    ||||| ||||||| || |||||| |  ||||| || ||| |||||||||||||| |||| | |||||||||||||| |||||    
T  635824 gggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttat 635743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 38359041 - 38359130
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaa 236  Q
    ||||| |||||||||| | |||| |||||||| || || |||||| || |||||  |||||  ||||||| ||||| |||||||||||||    
T  38359041 gggcaatggttaaacatctaaaataagtaagttttcatgaaaaagatgggtaatcgttactttatcaaaattaacatcttatatttctaa 38359130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 43862952 - 43863021
Alignment:
Q  164 ccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    ||||| ||||||||| || ||||||||||  ||||||||||||| ||| || ||| |||| |||||||||    
T  43862952 ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgacagtttatatttc 43863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 27284066 - 27284169
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| |||||||||| |||||| || ||||| || || ||||||||||| ||| |||| |  ||||||||||||| |||||||||| || ||||| |||    
T  27284066 gggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaattt 27284165  T
Q  247 ctat 250  Q
    ||||    
T  27284166 ctat 27284169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 51100138 - 51100041
Alignment:
Q  155 gttaaacaaccaaaagaagtaagtctta-attaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||| ||||| |||||| | ||  |||||||||| |||||||||||||| |||||||||| | | |||||||||  |||| ||||||||||||    
T  51100138 gttaaacaatcaaaacaagtaacttttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttctatt 51100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 12094961 - 12095037
Alignment:
Q  156 ttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    ||||||| |||||| |||||||| || || ||||||||||||||| ||||||  ||||||||||| | |||||||||    
T  12094961 ttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattt 12095037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 19480550 - 19480616
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||| |||||||| || || ||||||||||||||| ||||||  ||||||||||||| |||||||||    
T  19480550 aaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 20775072 - 20775170
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| || |||||| |||||||| || || |||||||| |||||| |||| |  ||||||| ||| | ||||||||||||| ||||||||| ||||    
T  20775072 tggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttatt 20775170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 44639901 - 44639946
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatt 231  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||    
T  44639901 aaaaagttgtgtaatcattacttaatcaaaagtaacatcttatatt 44639946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 4860159 - 4860215
Alignment:
Q  195 tgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||||||| |||||||||| | | |||||||||  |||||||||||||||||    
T  4860159 tgtaattattacttaatcaaaagtcaaaacttatattttcaaaacaaattttctatt 4860215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 34341452 - 34341520
Alignment:
Q  183 attaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||||||||||||||| ||||  ||||||||| | ||| ||||| || |||||| ||||||||    
T  34341452 attaaaaagttgtgtaattattgctaagacaaaagtaaaatcttgtatttttacaacaaaatttctatt 34341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 45921418 - 45921354
Alignment:
Q  187 aaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||||||||||||||| |||||| ||| | | |||||||||  || ||||||||||||||    
T  45921418 aaaagttgtgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctatt 45921354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 16831182 - 16831116
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||| || ||||||||||| |||||||||| | |  |||||||| ||||||||||||| ||||    
T  16831182 taaaaagtagtataattattacttaatcaaaagtcaaaatttatatttttaaaacaaattttatatt 16831116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 42595264 - 42595198
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    ||||| ||||||||| ||||||  |||||||||||||  ||||||||  |||||||||||| |||||    
T  42595264 aaaaaattgtgtaatcattactttatcaaaagtaacattttatattttcaaaacaaattttatattc 42595198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 16341215 - 16341126
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||||| |||||| || ||| | || || ||||| || |||||| |||||| ||||||||||||||  ||||||||| || |||||    
T  16341215 tggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaa 16341126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 31647731 - 31647804
Alignment:
Q  163 accaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaa 236  Q
    |||||||||| ||||| || ||||||||||  |||||||||||||  || |||||| | || ||||||||||||    
T  31647731 accaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtgatagtttatatttctaa 31647804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 55090812 - 55090873
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||||||||||||||||| ||| |||||||||| | | |||||||||  || |||||||||    
T  55090812 taaaaagttgtgtaattataacttaatcaaaagtcaaaacttatattttcaagacaaatttt 55090873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 26829486 - 26829588
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| ||||||| || | |||| |||||| | || || ||||||||||||||| ||||||  ||||||||||||| |||||||||| || ||||| |||    
T  26829486 gggcaatggttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaattt 26829585  T
Q  247 cta 249  Q
    |||    
T  26829586 cta 26829588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 11802938 - 11803020
Alignment:
Q  183 attaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattcttggataccttaa 265  Q
    ||||||||||  |||||| |||| | | ||||||||||||| ||||||||| ||||||| ||||||| | |||||| ||||||    
T  11802938 attaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttccaaaacaatttttctacttttggattccttaa 11803020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 48502596 - 48502662
Alignment:
Q  183 attaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttcta 249  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||||||  || |||| |||||||    
T  48502596 attaaaaagttgtgtaataattagttagtcaaaagtaacagcttatattttcaagacaatttttcta 48502662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 28490730 - 28490665
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctat 250  Q
    ||||||||||||||||||||||| || ||||| | | | ||||||||| ||| |||||||||||||    
T  28490730 taaaaagttgtgtaattattacttaagcaaaaatcaaaacttatatttttaagacaaattttctat 28490665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 52429619 - 52429722
Alignment:
Q  144 ttggggcagtggttaaacaaccaaaagaagtaagtcttaattaaaa-agttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||||||||||| || | |||| |||||||  ||||| |||| ||||||||||| ||||||| ||||| ||||||| ||||  ||||||| |||||    
T  52429619 ttggggcagtggttaagcatc-aaaacaagtaagctttaatgaaaaaagttgtgtaatcattactagatcaagagtaacatcttaattttctaagacaaa 52429717  T
Q  243 ttttc 247  Q
     ||||    
T  52429718 atttc 52429722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 27530 - 27596
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||| |||||||||||||| |||||||||| | | |||||||||  || ||||||||| ||||    
T  27530 taaaaagtagtgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttatt 27596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 10226555 - 10226477
Alignment:
Q  173 gtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||| || || ||||||||||||||| ||||||  ||||||| ||||| |||||||||  || ||||| ||||||||    
T  10226555 gtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatt 10226477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 27688492 - 27688558
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||| |||||||| || || ||||| ||||||||| ||||||  ||||||||||||| |||||||||    
T  27688492 aaaacaagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattt 27688558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 31160758 - 31160824
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||  ||||||||||||| |||||||||| | |  |||||||| ||| ||||||||||||||    
T  31160758 taaaaagtgatgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctatt 31160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 50127451 - 50127381
Alignment:
Q  163 accaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||||||||||||| || ||||||||||  |||||||||||||  || |||| | |||| |||||||||    
T  50127451 accaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaatgacagtttatatttc 50127381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 8001826 - 8001781
Alignment:
Q  187 aaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||||||| ||||||  ||||||||||||| |||||||||    
T  8001826 aaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 8001781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 11449073 - 11449158
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||| |||||||| || || |||||||| ||||||||||||   ||||||| |||||  |||||||| ||| ||||||||| ||||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatt 11449158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 15419763 - 15419675
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||||| |||||  |||||| | || ||||||||||  | ||||||||||| ||| ||||||||||| ||||||||| || |||||    
T  15419763 tggttaaaca-ccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagtaacagtttatatttccaatacaaa 15419675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 27908951 - 27908984
Alignment:
Q  185 taaaaagttgtgtaattattactaaatcaaaagt 218  Q
    ||||||||||||||||||||||| ||||||||||    
T  27908951 taaaaagttgtgtaattattacttaatcaaaagt 27908984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 34347629 - 34347556
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaa 220  Q
    ||||| || |||| || |||||| |||||| |||| || ||||||||||||||| ||||||  |||||||||||    
T  34347629 gggcaatgattaagcatccaaaacaagtaaatctttatgaaaaagttgtgtaatcattactttatcaaaagtaa 34347556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 30105 - 30002
Alignment:
Q  148 ggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttc 247  Q
    |||| ||||||||||  ||||| |||||||| || || ||||  |||||||||||||| | ||| |||||||||| |||||||||  |||| ||| ||||    
T  30105 ggcattggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaacatcttatattttcaaaataaagtttc 30006  T
Q  248 tatt 251  Q
    ||||    
T  30005 tatt 30002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 35901529 - 35901431
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| || |||||| |||||||| || || ||||||||||| ||| |||| | ||| |||||||||| |||| ||||  |||||||| ||||||||    
T  35901529 tggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctatt 35901431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 600372 - 600452
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 233  Q
    |||||||||| | |||| || ||||| || || ||||||||||| ||| ||||||  ||||||||||||| ||||||||||    
T  600372 tggttaaacatctaaaacaaataagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaacatcttatatttc 600452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 18200792 - 18200696
Alignment:
Q  155 gttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||| || |||||| |||||||  || || ||||| ||||||||| |||||| ||||||||||||||  |||||||| ||| ||||| ||| ||||    
T  18200792 gttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatt 18200696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 20542381 - 20542485
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| ||||||| || ||||||  ||||||| || |  |||||  |||||||| |||||| |||||||||||||| |||||||||| || || || |||    
T  20542381 gggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaattt 20542480  T
Q  247 ctatt 251  Q
    |||||    
T  20542481 ctatt 20542485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 27507026 - 27506966
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    |||||||||||||||||||| |  ||||||||||| | |||||||||| ||||||| ||||    
T  27507026 aaaaagttgtgtaattattattttatcaaaagtaatatcttatatttccaaaacaattttt 27506966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 40607332 - 40607396
Alignment:
Q  187 aaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||| |||||||||||||| |||||||||| | | ||||||||| ||| | ||||||||||||    
T  40607332 aaaagtagtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatt 40607396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 44649057 - 44648953
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaatttt 246  Q
    ||||| || |||| || |||||| || ||||| || || ||||||||||||||| ||||||  |||||||||||||  ||||||||  || ||||| |||    
T  44649057 gggcaatgattaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaattt 44648958  T
Q  247 ctatt 251  Q
    |||||    
T  44648957 ctatt 44648953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 1988793 - 1988892
Alignment:
Q  166 aaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattcttggataccttaa 265  Q
    |||||| |||||  || ||||||||||  |||||| |||| | | ||||||||||||| ||||||||| || |||| ||||||| | |||||| ||||||    
T  1988793 aaaagaggtaagaatttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttcgaagacaatttttctacttttggattccttaa 1988892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 12201835 - 12201890
Alignment:
Q  196 gtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| ||||  |||||||||||||||||||||||| || ||||| ||||||||    
T  12201835 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctatt 12201890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 12446263 - 12446318
Alignment:
Q  196 gtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||| ||||  |||||||||||||||||||||||| || ||||| ||||||||    
T  12446263 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctatt 12446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 18131192 - 18131306
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 252  Q
    ||||||| ||||||||| |||||| | || ||||||| || |||||||||||||| |||||  ||| | | |||||||||  || ||||||||||||||     
T  18131192 tggttaagcaaccaaaacaagtaactttttattaaaa-gtagtgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttctattt 18131290  T
Q  253 ttggataccttaatca 268  Q
     |||||  ||||||||    
T  18131291 atggatttcttaatca 18131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 23725744 - 23725670
Alignment:
Q  147 gggcagtggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaac 221  Q
    ||||| ||||||| || |||||| |||||||| || || |||||||||||| || |||||| |||| ||||||||    
T  23725744 gggcattggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtgatcattactcaatcgaaagtaac 23725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 37530070 - 37530004
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagta 219  Q
    ||||||||||| ||||||||  |||| || ||||||||||||| ||||||| ||  |||||||||||    
T  37530070 tggttaaacaatcaaaagaaacaagtttttattaaaaagttgtttaattataacataatcaaaagta 37530004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 3137433 - 3137498
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    ||||||||||||||| ||||||  ||||||||||||| |||| ||||  || ||||| ||||||||    
T  3137433 aaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatt 3137498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 3347590 - 3347545
Alignment:
Q  187 aaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 232  Q
    |||||||||||||||||||||  || |||||||||| |||||||||    
T  3347590 aaaagttgtgtaattattactttattaaaagtaacatcttatattt 3347545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 51646 - 51735
Alignment:
Q  153 tggttaaacaaccaaaagaagtaagtcttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 242  Q
    |||||||||| |||||| || ||| | || || ||||| || |||||| |||||| ||||||||||||||  ||||||||| || |||||    
T  51646 tggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaa 51735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 36565 - 36630
Alignment:
Q  186 aaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 251  Q
    |||||||||| |||| |||| | |||||||||||||| |||||||||  |||||||| ||| ||||    
T  36565 aaaaagttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatt 36630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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