View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-5 (Length: 826)
Name: NF4718-Insertion-5
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 74 - 826
Target Start/End: Complemental strand, 9574707 - 9573949
Alignment:
| Q |
74 |
aagatcaaatatctcttctgaagttcaagaagtgtgcttgtttatacataacccaaaaacacaacacatgtctttttgaaaagtattatt------attc |
167 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
9574707 |
aagatcaaatatctcttatgaagttcaagaagtgtgcttgtttatacataccccaaaaacacaacacatgtctttatgaaaagtattattcattacattc |
9574608 |
T |
|
| Q |
168 |
atggcactattgagtttagcctcaacctatannnnnnnnnnnnnnnnnggaaaactactcacttatacaaacacagactgggctggatgtcccaacacaa |
267 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| |||||||| |||||| |
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| T |
9574607 |
atggcactattgagtttagcctcaacctatatctctctctcctctctcg--aaactactcgcttatacaaacatagactgggctagatgtcccgacacaa |
9574510 |
T |
|
| Q |
268 |
gaagatatatctcttattattgagtatatattggtgataatttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtaccg |
367 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9574509 |
gaagatatatctctaattattgagtatatattggtgataacttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtatcg |
9574410 |
T |
|
| Q |
368 |
aggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatattgtgttaat |
467 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9574409 |
aggagtagctaatgttctgtctaaatcttgcttgattagaaacttacttttagaactacattgtccagttacaaaagctactttggtatattgtgttaat |
9574310 |
T |
|
| Q |
468 |
gttgctgcaatgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtc |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9574309 |
gttgctgcaatgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcatggtc |
9574210 |
T |
|
| Q |
568 |
aagtgccagtcttacatgttccctatcattatcgatttgctattatcttcacaaagggacttatgttgctactttttatagtgattttagag---attta |
664 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
9574209 |
aagtgcgagtcttacatgttccctatcattatcgatttgctaacatcttcacaaagggacttacgttgctactttttatagtgattttagagattattta |
9574110 |
T |
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| Q |
665 |
actttcaatttcgattgtggagatggctaagagactattttatgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttc |
764 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9574109 |
actttcaatttcgattttggagatggctaagagactattttatgtatatatattattgatcaaatgaatgaaatgacgatcaatatctcttacaattttc |
9574010 |
T |
|
| Q |
765 |
ttttatctttgggtttgggctatgtccctccatacatatttgttttgtttttattaataata |
826 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9574009 |
-tttatctttggatttgggctatgtccctccatacatacttgttttgtttttattaataata |
9573949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 506 - 819
Target Start/End: Complemental strand, 9565406 - 9565096
Alignment:
| Q |
506 |
ataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttccctatcattatcgattt |
605 |
Q |
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||||||||||||| ||||||| ||||| |||||||||||| | ||||||||||||| | ||||||||| ||||| ||||||| | | || |||||||||| |
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| T |
9565406 |
ataacacaccaaacacattgatatgaacatacacttcttgggcgaaaaagtttctcccagtcaagtgcgagtctaacatgtttcatgtccttatcgattt |
9565307 |
T |
|
| Q |
606 |
gctattatcttcacaaagggacttatgttgctactttttatagtgattttagagatttaactttcaatttcgattgtggagatggctaagagactatttt |
705 |
Q |
| |
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|||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| | ||||||||||||| || |||||||| ||| |||||||||| |
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| T |
9565306 |
gctaacatcttcacaaagagacttacgttgctacttttta--gtgattttagagattcatctttcaatttcgactgaggagatggttaaaagactatttt |
9565209 |
T |
|
| Q |
706 |
atgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttcttttatctttgggtttgggctatgtccctccatacatattt |
805 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| |||||| |
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| T |
9565208 |
atatatatatatcattgatcaaataaatgaaatgacgaccaatatctcttacaattttc-tttatctttgggtttgggttatgtcccttcatatatattt |
9565110 |
T |
|
| Q |
806 |
gttttgtttttatt |
819 |
Q |
| |
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| || ||||||||| |
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| T |
9565109 |
ggttggtttttatt |
9565096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 9574511 - 9574447
Alignment:
| Q |
11 |
aagaagatatatctcttattattgagtatatattggtgataatttgatctcttattatgcaaaaa |
75 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9574511 |
aagaagatatatctctaattattgagtatatattggtgataacttgatctcttattatgcaaaaa |
9574447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 10533587 - 10533485
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
459 |
Q |
| |
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|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| |||||||| |||| |
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| T |
10533587 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactttggtttatt |
10533488 |
T |
|
| Q |
460 |
gtg |
462 |
Q |
| |
|
||| |
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|
| T |
10533487 |
gtg |
10533485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 8045214 - 8045304
Alignment:
| Q |
478 |
tgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtca |
568 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| |||| ||||| |||||||||| || | ||||||||| ||| |||||| |
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| T |
8045214 |
tgtatctatccgacaatccagttcaacatcaacgcaccaaacacatcgaaattgatatacactttgtgcgggaaaaagttactcgcggtca |
8045304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 22949570 - 22949640
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
430 |
Q |
| |
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|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| |
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| T |
22949570 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattg |
22949640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 538
Target Start/End: Complemental strand, 25624025 - 25623847
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
459 |
Q |
| |
|
|||||||| ||||| | ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | |||||||||| |||| |
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| T |
25624025 |
gagtaccgcggagtcaccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactttggtttatt |
25623926 |
T |
|
| Q |
460 |
gtgttaatgttgctgcaatgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatataca |
538 |
Q |
| |
|
||| |||||| ||| | ||| |||||| ||| |||| ||||| ||| ||||||| |||| || ||||||||||| |
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| T |
25623925 |
gtgataatgtgagtgctgtctatttatccggcaacccagtccaacatcaacgcaccaaacacatcgagatgaatataca |
25623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 462
Target Start/End: Original strand, 91801 - 91903
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
459 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| ||| |||| |||| |
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| T |
91801 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactctggtttatt |
91900 |
T |
|
| Q |
460 |
gtg |
462 |
Q |
| |
|
||| |
|
|
| T |
91901 |
gtg |
91903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 47249677 - 47249575
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
459 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | ||||| |||| |||| |
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| T |
47249677 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactatggtttatt |
47249578 |
T |
|
| Q |
460 |
gtg |
462 |
Q |
| |
|
||| |
|
|
| T |
47249577 |
gtg |
47249575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 42336435 - 42336483
Alignment:
| Q |
401 |
gattagaaacttacttttagaactacattgtccggttacaaaagctact |
449 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
42336435 |
gattagaatcttacttttagaaatacattgttctgttacaaaagctact |
42336483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 3955185 - 3955255
Alignment:
| Q |
360 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
430 |
Q |
| |
|
||||||| ||||| || ||||| || ||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
3955185 |
gagtaccacggagtcgccaatgtagtatctaaatcttgttggattagaaacttactgttggaactacattg |
3955255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 589
Target Start/End: Complemental strand, 28495288 - 28495210
Alignment:
| Q |
511 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
589 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
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|
| T |
28495288 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
28495210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 589
Target Start/End: Complemental strand, 29807697 - 29807619
Alignment:
| Q |
511 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
589 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
|
|
| T |
29807697 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
29807619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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