View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-6 (Length: 772)
Name: NF4718-Insertion-6
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 31 - 616
Target Start/End: Complemental strand, 9696489 - 9695905
Alignment:
| Q |
31 |
actaatcccgtttagtttattagtagcacgagttacctacctagatatttttataaacttgtagctggtgctatatatagactcccatttacattccagt |
130 |
Q |
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| T |
9696489 |
actaatcccgtttagtttattagttgcacgagttacctacctagatatttttataaacttgtagctggtgctatatatagactctcatttacattccagt |
9696390 |
T |
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| Q |
131 |
gaatcaactccaatttatcttctttaattcaagattacttgtccttatgnnnnnnnnnnnnnnncttgaatgttggccaaagtttgtattctagtataga |
230 |
Q |
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| T |
9696389 |
gaatcaactccaatttatcttctttaattcaagattacttgtccttatgaaaaaatacaaaaaacttgaatgttggccaaagcttgtattctagtataga |
9696290 |
T |
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| Q |
231 |
atataatgaagaaaaaataaatacctgcgagtttcaactttcaagtaactacgtgtttggatatataagcacgatgcaacatacaacatagcttcacgtg |
330 |
Q |
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| T |
9696289 |
atataatgaagaaaaaataaatacctgcgagtttcaactttcaagtaactacgtgtttggatatataagcacgatgcaacatataacataacttcac-tg |
9696191 |
T |
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| Q |
331 |
aataacagcattcaattggtagaagataatcaaaagaatgtaccataacaaactaagtctgtattaataataaaggtgggatttaagtacagatcatgaa |
430 |
Q |
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| T |
9696190 |
aataacagcattcaattggtagaagataatcaacagaatgtaccataacaaactgagtctgtattaataataaaggtgggatttaagtacagatcatgaa |
9696091 |
T |
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| Q |
431 |
gctgaatctacacttaaactatgcgctaatataaacctaaaaactgtttgttcatcaaaaaacagctttggatctaaaaagtttcccaattacattccaa |
530 |
Q |
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| T |
9696090 |
gctgaatctacacttaaactatgcgctaatataaacctaacaactgtttgttcatcgcaaaacagctttggatctaaaaagtttcccaattacattccaa |
9695991 |
T |
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| Q |
531 |
cctataataatgaaaattattctattgcagttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
616 |
Q |
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| T |
9695990 |
cctataataatgaaaattattctattgcagttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 728 - 772
Target Start/End: Complemental strand, 9695795 - 9695751
Alignment:
| Q |
728 |
ttcacttcagacttggacttctcagatccctcttcctccgaagca |
772 |
Q |
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| T |
9695795 |
ttcacttcagacttggacttctcagatccttcttcctccgaagca |
9695751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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