View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-7 (Length: 610)
Name: NF4718-Insertion-7
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 36 - 610
Target Start/End: Complemental strand, 47177104 - 47176541
Alignment:
| Q |
36 |
gtgtttgtacaatgattttcttatggtgttttgctctcctttgcttaagcatttctctatacttatattattgcttctgtacctttgtcctttttatttt |
135 |
Q |
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| T |
47177104 |
gtgttggtacaatgattatcttatggtgttttgctctcctttgcttaagcatttctctatacttacattattgcttctgtacctttgtcctttttatttt |
47177005 |
T |
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| Q |
136 |
tgtaaactctgaaacaaattttcctttgtggagtatgggcaactaccccaagttccaacactgacatgagcatccatgaccatggtcaccaagaacatga |
235 |
Q |
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| T |
47177004 |
tgtaaactctgaaacaaattttcctttgtggagtatgggcaactaccccaagttccaacactgacatgagcatccatgaccatggtcaccaagaacatga |
47176905 |
T |
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| Q |
236 |
atgggtc----tgtgatcaatgatgatgcctttctcatcattgaaagagtggctgtcacgtggggtagggaaagtcaatgctcatttactcatagtacta |
331 |
Q |
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| T |
47176904 |
atgggtctgtgtgtgatgaatgatgatgcctttctcatcattgaaagagtggctgtgacgtggggtagggaaagtcaatgctcatttactcatagtacta |
47176805 |
T |
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| Q |
332 |
ttattattcatgaatgaaggtgagtgagtgagttcacctcacttcaacaccatgannnnnnnnnnnnnnnngagtaaacta-----ttaggtcctaaaat |
426 |
Q |
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| T |
47176804 |
ttattattcatgaatgaaggtgagtgagtgagttcacctcacttcaacaccatga-------tttttttttgagtaaactactattttaggtcctaaaat |
47176712 |
T |
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| Q |
427 |
tgtaagtgtccgacaatttgagattccaaatttactaaatatcaaa-tgttccataaagttgtctaacattagtcgaaatgcttcctctgtcaagtaatc |
525 |
Q |
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| T |
47176711 |
tgtaagtgtccgacaatttgagattccaaatttacgaaatatcaaactgttccacaaagttgtctaacattagtcaaaatgcttcctctgtcaagtaatc |
47176612 |
T |
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| Q |
526 |
ttattagaggtgctgaatgctgatgttaaattactgtgtcttgtccacgttgatgtcaagtcacacagaaccttaaacgctcgtt |
610 |
Q |
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| T |
47176611 |
tt--------------atgctaatgttaaattaccgtgtcttgtccacgttgatgtcaagtcacacagaaccttaaacgctcgtt |
47176541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 127 - 350
Target Start/End: Complemental strand, 47168892 - 47168684
Alignment:
| Q |
127 |
ttttatttttgtaaactctgaaacaaattttcctttgtggagtatgggcaactaccccaagttccaacactgacatgagcatccatgaccatggtcacca |
226 |
Q |
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| T |
47168892 |
ttttatttttgtaaacaatgaaacagactttcctttgtggagtatgggcaactaccctaagttccaacactgacatgagcatcaatgaccatggtcacca |
47168793 |
T |
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| Q |
227 |
agaacatgaatgggtctgtgatcaatgatgatgcctttctcatcattgaaagagtggctgtcacgtggggtagggaaagtcaatgctcatttactcatag |
326 |
Q |
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| T |
47168792 |
agaacatg---------------aatgatggtgcatttctcatcattgaaggagtggctgtgacgtggggtagggaaagtcaatgctcatgttctcatag |
47168708 |
T |
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| Q |
327 |
tactattattattcatgaatgaag |
350 |
Q |
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| T |
47168707 |
tactattatcattcatgagtgaag |
47168684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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