View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718-Insertion-8 (Length: 594)
Name: NF4718-Insertion-8
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 55896369 - 55896945
Alignment:
| Q |
8 |
cagtggaggtacgaggttaactgtggaagatcacgacatgttgtgaacgctctgttgtctgagaatgtttggtttttacaagattgagtttgagctgagg |
107 |
Q |
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| T |
55896369 |
cagtggaggtacgaggttaactgtggaagatcacgacatgttgtgaacgctctgttgtctgagaatgtttggtttttacaagattgagtttgagctgagg |
55896468 |
T |
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| Q |
108 |
atgtcaaaattatgctactcaaaacacacaaggccaacgtaagcctcaacatgatggtgctaaaattgtctcctccttccctttgctttgtgtagattct |
207 |
Q |
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| T |
55896469 |
atgtcaaaattatgctactcaaaacacacaaggccaacgtaagcctcaacatgatggtgctaaaattgtctcctccttccctttgctttgtgtagattct |
55896568 |
T |
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| Q |
208 |
tcaatcggttgcttttgcttttggccaaactcaaagggatcttttattgtttatttctttcttgttgtgatgtaaatacaatatgagagggagagatttg |
307 |
Q |
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| T |
55896569 |
tcaatcggttgcttttgcttttggccaaactcaaagggatcttttattgtttatttctttcttgttgtgatgtaaatacaatatgagagg--gagatttg |
55896666 |
T |
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| Q |
308 |
tttatttatataaagagttggtgaggtttggttgttgatgtggaatgaggagggcggaagaagaggtaagagaaggaagaatatcatacaatttttgaat |
407 |
Q |
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| T |
55896667 |
tttatttatataaagagttggtgaggtttggttgttgatgtggaat---gagggcggaagaagaggtaagagaaggaacaatatcatacaatttttgaat |
55896763 |
T |
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| Q |
408 |
tattagcaaataaacccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttga-acgtgtcataacactagttgtt |
506 |
Q |
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| T |
55896764 |
tattagcaaataaacccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttgataagttttattatgttagt---- |
55896859 |
T |
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| Q |
507 |
tgatactaaaaagcatataaagttttcagtagttttttaaattttagtgattgaatttgataaatgtttgaaaactaatgtactgata |
594 |
Q |
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| T |
55896860 |
--ctactaaaaagcatataaagttttcagtagttttttaaattttagtgattgaatttgataaatgtttgaaaactaatgtactgata |
55896945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 6e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 233 - 511
Target Start/End: Complemental strand, 1028500 - 1028230
Alignment:
| Q |
233 |
caaactcaaagggatcttttattgtttatttctttcttgttgtgatgtaaatacaatatgagaggga---------gagatttgtttatttatataaaga |
323 |
Q |
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| T |
1028500 |
caaactcaaagggatcttttattgtttatttctttcttgttgtgatgtaaatacaatatgagagggacagaggagggagatttgtttatttatttaaaga |
1028401 |
T |
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| Q |
324 |
gttggtgaggtttggttgttgatgtggaatgag-gagggcggaagaagaggtaagagaaggaagaatatcatacaatttttgaattattagcaaataaac |
422 |
Q |
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| T |
1028400 |
gttggtggggtttggttgttgatgtggaatgactgagggcggaagaa-------------------tatcatacaatttttgaattattagcaaataaac |
1028320 |
T |
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| Q |
423 |
ccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttgaacgtgtcataa-cactagttgtttgata |
511 |
Q |
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| T |
1028319 |
ccttgattaataaaattttaagataaaatagtaccattaatcataaaataaaattaatttgaacgtgtcataaccactggttgtttgata |
1028230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 1028150 - 1028100
Alignment:
| Q |
541 |
ttttaaattttagtgattgaatttgataaatgtttgaaaactaatgtactg |
591 |
Q |
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| T |
1028150 |
ttttaaattttagtgattgaatttgataaatgtttgaaaactaatgtactg |
1028100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1028594 - 1028550
Alignment:
| Q |
8 |
cagtggaggtacgaggttaactgtggaagatcacgacatgttgtg |
52 |
Q |
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| T |
1028594 |
cagtggaggtacgaggttaactgtggaagatcacgacatgttgtg |
1028550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 545
Target Start/End: Complemental strand, 1028207 - 1028177
Alignment:
| Q |
515 |
aaaagcatataaagttttcagtagtttttta |
545 |
Q |
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| T |
1028207 |
aaaagcatataaagttttcagtagtttttta |
1028177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 1028554 - 1028525
Alignment:
| Q |
195 |
ttgtgtagattcttcaatcggttgcttttg |
224 |
Q |
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| T |
1028554 |
ttgtgtagattcttcaatcggttgcttttg |
1028525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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