View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4718-Insertion-9 (Length: 587)

Name: NF4718-Insertion-9
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4718-Insertion-9
NF4718-Insertion-9
[»] chr4 (36 HSPs)
chr4 (58-587)||(8469403-8469934)
chr4 (440-587)||(8126592-8126739)
chr4 (88-175)||(18630607-18630694)
chr4 (8-53)||(8468745-8468790)
chr4 (82-144)||(29373937-29373999)
chr4 (57-114)||(8468936-8468993)
chr4 (60-189)||(44319863-44319991)
chr4 (58-154)||(24929441-24929537)
chr4 (84-144)||(55870393-55870453)
chr4 (85-144)||(49219097-49219156)
chr4 (92-154)||(4071830-4071892)
chr4 (91-137)||(13949903-13949949)
chr4 (84-137)||(927441-927494)
chr4 (62-123)||(42866047-42866108)
chr4 (88-185)||(54325093-54325190)
chr4 (84-144)||(2996531-2996591)
chr4 (58-138)||(7694036-7694116)
chr4 (88-144)||(10192242-10192298)
chr4 (84-144)||(53626734-53626794)
chr4 (58-114)||(53943594-53943650)
chr4 (82-137)||(25885824-25885879)
chr4 (84-123)||(30207623-30207662)
chr4 (82-137)||(32920450-32920505)
chr4 (84-114)||(24444026-24444056)
chr4 (82-131)||(927263-927312)
chr4 (67-131)||(7368090-7368155)
chr4 (85-114)||(11842203-11842232)
chr4 (58-123)||(19154725-19154790)
chr4 (82-131)||(24091434-24091483)
chr4 (58-114)||(26747428-26747485)
chr4 (84-121)||(29778776-29778813)
chr4 (98-175)||(30024627-30024704)
chr4 (84-144)||(8130132-8130192)
chr4 (84-144)||(11802492-11802552)
chr4 (78-114)||(24160541-24160577)
chr4 (84-144)||(49085947-49086007)
[»] chr5 (33 HSPs)
chr5 (58-114)||(37526225-37526281)
chr5 (58-114)||(37588386-37588442)
chr5 (82-175)||(19177406-19177499)
chr5 (84-205)||(32172550-32172671)
chr5 (82-136)||(9703290-9703344)
chr5 (95-144)||(583836-583885)
chr5 (84-137)||(10272483-10272536)
chr5 (84-205)||(29588777-29588897)
chr5 (58-131)||(31030156-31030229)
chr5 (58-114)||(37690662-37690719)
chr5 (58-137)||(9202774-9202853)
chr5 (84-144)||(14295464-14295524)
chr5 (85-137)||(32059642-32059694)
chr5 (77-137)||(36539711-36539771)
chr5 (84-144)||(39823173-39823233)
chr5 (85-189)||(6738458-6738564)
chr5 (84-123)||(19138771-19138810)
chr5 (84-175)||(35960341-35960431)
chr5 (58-121)||(41957477-41957540)
chr5 (91-137)||(9927550-9927596)
chr5 (82-155)||(10303748-10303819)
chr5 (72-114)||(14961920-14961962)
chr5 (61-131)||(18875332-18875402)
chr5 (85-123)||(29054887-29054925)
chr5 (82-144)||(42181142-42181204)
chr5 (104-189)||(37063146-37063231)
chr5 (88-153)||(40120069-40120134)
chr5 (84-137)||(41277402-41277455)
chr5 (58-114)||(6183432-6183488)
chr5 (84-120)||(6587159-6587195)
chr5 (84-152)||(18857452-18857520)
chr5 (58-114)||(26390816-26390872)
chr5 (84-124)||(34205217-34205257)
[»] scaffold0024 (1 HSPs)
scaffold0024 (85-189)||(27489-27593)
[»] chr8 (27 HSPs)
chr8 (88-204)||(12972754-12972870)
chr8 (84-175)||(34770819-34770910)
chr8 (58-137)||(12361157-12361236)
chr8 (58-114)||(31705073-31705129)
chr8 (84-122)||(9834841-9834879)
chr8 (82-143)||(787156-787217)
chr8 (90-175)||(10727124-10727209)
chr8 (58-131)||(29973052-29973125)
chr8 (85-137)||(1470909-1470961)
chr8 (84-124)||(7645956-7645996)
chr8 (84-144)||(42597359-42597419)
chr8 (58-137)||(6509329-6509408)
chr8 (84-131)||(11059747-11059793)
chr8 (58-124)||(34551098-34551164)
chr8 (84-114)||(35869825-35869855)
chr8 (58-175)||(13652142-13652259)
chr8 (58-175)||(13710785-13710902)
chr8 (58-147)||(31862448-31862537)
chr8 (87-147)||(2093234-2093294)
chr8 (88-144)||(3269652-3269708)
chr8 (84-124)||(8062502-8062542)
chr8 (82-114)||(12132821-12132853)
chr8 (59-107)||(30627929-30627977)
chr8 (84-120)||(31884576-31884612)
chr8 (84-175)||(35298529-35298621)
chr8 (58-114)||(39268530-39268586)
chr8 (84-124)||(43704430-43704470)
[»] chr3 (34 HSPs)
chr3 (58-114)||(14548747-14548803)
chr3 (58-137)||(23315591-23315670)
chr3 (58-123)||(2318623-2318689)
chr3 (85-175)||(27792799-27792889)
chr3 (84-189)||(38462194-38462299)
chr3 (84-144)||(10101528-10101588)
chr3 (84-144)||(10212453-10212513)
chr3 (84-144)||(14145870-14145930)
chr3 (84-136)||(21872323-21872375)
chr3 (74-114)||(32109352-32109392)
chr3 (82-142)||(32555031-32555091)
chr3 (84-152)||(40122805-40122872)
chr3 (84-131)||(10540544-10540591)
chr3 (82-137)||(12923375-12923430)
chr3 (90-136)||(28779322-28779368)
chr3 (91-137)||(36139843-36139889)
chr3 (84-114)||(41057026-41057056)
chr3 (87-137)||(48397611-48397661)
chr3 (72-114)||(48807696-48807738)
chr3 (87-152)||(19679511-19679576)
chr3 (65-110)||(33046842-33046887)
chr3 (87-144)||(48364934-48364991)
chr3 (65-121)||(1217833-1217889)
chr3 (84-144)||(10357391-10357451)
chr3 (62-105)||(25776114-25776157)
chr3 (104-180)||(33307652-33307728)
chr3 (87-131)||(35450561-35450605)
chr3 (84-144)||(37788818-37788878)
chr3 (84-144)||(42084303-42084363)
chr3 (84-112)||(43875638-43875666)
chr3 (91-175)||(44374703-44374787)
chr3 (82-114)||(45590652-45590684)
chr3 (86-122)||(51197790-51197826)
chr3 (58-110)||(51510219-51510271)
[»] chr2 (35 HSPs)
chr2 (58-142)||(11513858-11513942)
chr2 (88-183)||(11344340-11344435)
chr2 (82-188)||(35755552-35755658)
chr2 (87-181)||(37053515-37053609)
chr2 (84-204)||(10143070-10143190)
chr2 (88-144)||(14666506-14666562)
chr2 (58-122)||(22681211-22681275)
chr2 (58-137)||(6993750-6993829)
chr2 (89-144)||(28803563-28803618)
chr2 (84-134)||(18066096-18066146)
chr2 (58-152)||(29316801-29316895)
chr2 (84-137)||(5043612-5043665)
chr2 (84-137)||(33942115-33942168)
chr2 (87-131)||(33944576-33944620)
chr2 (86-137)||(4550742-4550793)
chr2 (84-131)||(29935974-29936021)
chr2 (65-124)||(40158696-40158755)
chr2 (58-109)||(42621401-42621452)
chr2 (84-134)||(1625868-1625918)
chr2 (90-175)||(7103541-7103624)
chr2 (89-171)||(10285284-10285366)
chr2 (57-123)||(13869120-13869186)
chr2 (98-204)||(33192091-33192197)
chr2 (97-175)||(35329884-35329962)
chr2 (82-124)||(37276724-37276766)
chr2 (84-114)||(39983330-39983360)
chr2 (83-188)||(1493564-1493669)
chr2 (58-131)||(6167309-6167382)
chr2 (84-181)||(17952753-17952850)
chr2 (84-121)||(25800810-25800847)
chr2 (84-137)||(43141836-43141889)
chr2 (87-131)||(9750917-9750961)
chr2 (83-123)||(23143029-23143069)
chr2 (83-123)||(23554819-23554859)
chr2 (88-144)||(42907317-42907373)
[»] chr6 (21 HSPs)
chr6 (58-175)||(32386589-32386706)
chr6 (59-155)||(33787772-33787868)
chr6 (84-171)||(4006645-4006732)
chr6 (84-189)||(4248871-4248976)
chr6 (58-144)||(281874-281960)
chr6 (90-144)||(6310282-6310336)
chr6 (84-137)||(29274281-29274334)
chr6 (58-114)||(1275137-1275193)
chr6 (58-114)||(2117391-2117447)
chr6 (62-189)||(2514615-2514742)
chr6 (86-129)||(5550105-5550148)
chr6 (84-131)||(7485120-7485167)
chr6 (58-137)||(9093582-9093661)
chr6 (102-204)||(7713923-7714025)
chr6 (82-144)||(22742324-22742386)
chr6 (84-134)||(25100011-25100061)
chr6 (72-189)||(9732389-9732506)
chr6 (84-144)||(1402954-1403014)
chr6 (85-137)||(2112166-2112217)
chr6 (82-114)||(8035198-8035230)
chr6 (85-137)||(20671918-20671970)
[»] chr1 (41 HSPs)
chr1 (58-131)||(7218100-7218173)
chr1 (84-144)||(25006086-25006146)
chr1 (84-144)||(30371106-30371166)
chr1 (58-137)||(25479546-25479625)
chr1 (84-142)||(27738232-27738290)
chr1 (84-189)||(4363684-4363788)
chr1 (62-139)||(15361676-15361753)
chr1 (84-144)||(28467359-28467419)
chr1 (84-144)||(49517028-49517088)
chr1 (58-137)||(5592711-5592790)
chr1 (84-131)||(17269221-17269268)
chr1 (58-124)||(3224401-3224467)
chr1 (58-144)||(6932987-6933073)
chr1 (85-187)||(30259540-30259642)
chr1 (86-131)||(17422992-17423037)
chr1 (85-142)||(31517793-31517850)
chr1 (84-187)||(6659428-6659532)
chr1 (84-124)||(25005849-25005889)
chr1 (85-144)||(7273992-7274051)
chr1 (93-144)||(15360852-15360903)
chr1 (59-106)||(49282901-49282948)
chr1 (84-114)||(12564926-12564956)
chr1 (58-144)||(26630421-26630507)
chr1 (84-122)||(29045964-29046002)
chr1 (82-144)||(36070208-36070270)
chr1 (86-204)||(49557039-49557157)
chr1 (58-120)||(51957409-51957471)
chr1 (84-137)||(5421972-5422025)
chr1 (84-129)||(8130409-8130454)
chr1 (82-123)||(15515520-15515561)
chr1 (58-155)||(24915077-24915174)
chr1 (65-142)||(33527180-33527257)
chr1 (84-137)||(42556683-42556736)
chr1 (98-171)||(45999354-45999427)
chr1 (84-144)||(4200187-4200247)
chr1 (58-102)||(5924055-5924099)
chr1 (84-144)||(6074432-6074492)
chr1 (63-131)||(10581108-10581176)
chr1 (86-114)||(28689508-28689536)
chr1 (85-137)||(30257648-30257700)
chr1 (58-114)||(37241848-37241904)
[»] chr7 (29 HSPs)
chr7 (84-144)||(1417222-1417282)
chr7 (84-186)||(9527142-9527244)
chr7 (58-142)||(29363478-29363562)
chr7 (58-122)||(38010694-38010758)
chr7 (89-187)||(3610797-3610895)
chr7 (59-124)||(24895334-24895399)
chr7 (59-124)||(24909642-24909707)
chr7 (77-114)||(25507337-25507374)
chr7 (84-137)||(28340896-28340949)
chr7 (85-142)||(30456503-30456560)
chr7 (58-131)||(44821930-44822003)
chr7 (84-144)||(5006561-5006621)
chr7 (82-114)||(25558241-25558273)
chr7 (82-114)||(25558439-25558471)
chr7 (58-137)||(48157146-48157225)
chr7 (85-155)||(30496651-30496721)
chr7 (84-170)||(31002693-31002779)
chr7 (99-152)||(4572548-4572601)
chr7 (84-137)||(12110325-12110378)
chr7 (86-131)||(18516303-18516348)
chr7 (84-137)||(27548228-27548281)
chr7 (88-137)||(45813236-45813285)
chr7 (383-467)||(2745335-2745419)
chr7 (58-117)||(8690424-8690484)
chr7 (84-144)||(17989075-17989135)
chr7 (100-136)||(31908378-31908414)
chr7 (58-114)||(39505944-39506000)
chr7 (84-124)||(39518807-39518847)
chr7 (85-145)||(44151533-44151593)
[»] scaffold0654 (1 HSPs)
scaffold0654 (58-186)||(6663-6791)
[»] scaffold0014 (1 HSPs)
scaffold0014 (58-186)||(116582-116710)
[»] scaffold0053 (1 HSPs)
scaffold0053 (82-170)||(20111-20199)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 58 - 587
Target Start/End: Original strand, 8469403 - 8469934
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    ||||||||||| |||||| |||  |||||||||||| |||||| ||| ||||||||| || |||||| |||||| |||||||||||||||||||||||||    
T  8469403 ttatttccataggttctctagactaacttatgaaaaaaacttacagcctatatgaaagcactttgacattattttatcttctgttattgatatagtttct 8469502  T
Q  158 gcatgagcacttatatgacaagtgtttatgctgtgagcacttaattatactct--atccaaacaggaaatgacttcaacaaaacgttttcaatgttgtat 255  Q
    |||| ||||||||||||| |||  |||||||||||||  |||||||||||| |  ||||||||| |||||||||||||||||  ||||||||| ||||||    
T  8469503 gcataagcacttatatgataagcatttatgctgtgagtgcttaattatactgtttatccaaacatgaaatgacttcaacaaagagttttcaatattgtat 8469602  T
Q  256 tcatannnnnnnnnattcatttttcttggtgacaaacaggtttcttgatagagctgctattatttctactaaagagaagaacaaattgctagagaaagcc 355  Q
    |||||          |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||     
T  8469603 tcatatttttttgt-ttcatttttgctggtgacaaacaggtttcttgatagagcagctattatttctactaaagaaaagaaccaattgctagagaaagct 8469701  T
Q  356 gaaaa-tccaaatccttggaaactctgcactgtgacacaagttgaagaagtgaaatgtattttgagactattgccggtttggttatgcaccatcttctcc 454  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8469702 gaaaaatccaaatccttggaaactctgcactgtgacacaagttgaagaagtgaaatgtattttgagactattgccagtttggttatgcaccatcttctcc 8469801  T
Q  455 tctgtcgtcttcatacaaatgctttctctattcgtcgagcaaggttcaacgatgaacagaaaattttacaagtttgaaatccctcctgcaagcatgacag 554  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8469802 tccgtcgtcttcatacaaatgctttctctattcgtcgagcaaggctcaacaatgaacagaaaattttacaagtttgaaatccctcctgcaagcatgacag 8469901  T
Q  555 cattcgacatcattagcacatcagcattcatca 587  Q
    |||||||||||||||||||||||||||||||||    
T  8469902 cattcgacatcattagcacatcagcattcatca 8469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 440 - 587
Target Start/End: Complemental strand, 8126739 - 8126592
Alignment:
Q  440 tgcaccatcttctcctctgtcgtcttcatacaaatgctttctctattcgtcgagcaaggttcaacgatgaacagaaaattttacaagtttgaaatccctc 539  Q
    ||||| ||||||||||||   || ||||||||| ||||||||||||| || ||||||||||| || ||| |||||| ||||| ||||||| | |||||||    
T  8126739 tgcacaatcttctcctctagtgttttcatacaattgctttctctatttgttgagcaaggttctacaatggacagaacatttttcaagtttcagatccctc 8126640  T
Q  540 ctgcaagcatgacagcattcgacatcattagcacatcagcattcatca 587  Q
    || |||||||||||||||| || ||||| ||||||||| |||| ||||    
T  8126639 cttcaagcatgacagcatttgatatcataagcacatcaacatttatca 8126592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 18630694 - 18630607
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    ||||||||||||||||||||||||||| | | ||||| |||||| ||||| ||||||||| ||||||| ||||| ||| |||||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttattgaaatagtttatgcataagcgcttatatga 18630607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 8468745 - 8468790
Alignment:
Q  8 aggagaatgcatcacactaagggcctcaggtacgtgttttaagttc 53  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  8468745 aggagaatgcatcacactaagggcctcaggtaagtgttttaagttc 8468790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 29373937 - 29373999
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||| ||||||||||||||||  || |||||| |||||| ||||||||||||    
T  29373937 aacttatgaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttat 29373999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 8468993 - 8468936
Alignment:
Q  57 attatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||| |||||| |||| |||| ||||||||||||||||| |||||||||||||||    
T  8468993 attattttcataagctctctagaataacttatgaaaacaactaatagcttatatgaaa 8468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 44319991 - 44319863
Alignment:
Q  60 atttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgc 159  Q
    |||| ||||||||||| || | | ||||| |||| | ||| |||||||||||||| || || ||| |||||| ||||| | |||| || ||||||| | |    
T  44319991 attttcataagttctctaggatagcttatcaaaatagcttgtagcttatatgaaaacagttcgactttattttatctttt-ttatagaaatagtttatac 44319893  T
Q  160 atgagcacttatatgacaagtgtttatgct 189  Q
    |||||||||||||||| ||||| |||||||    
T  44319892 atgagcacttatatgataagtgcttatgct 44319863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 24929537 - 24929441
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtt 154  Q
    ||||||||||||| |||| || | |  |||||||||||||||||||||| ||||||| || || ||| |||||| ||||| |||||| || ||||||    
T  24929537 ttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatagtt 24929441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 55870393 - 55870453
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||||||||| ||||| || |||||| |||||| ||||| ||||||    
T  55870393 cttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttat 55870453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 49219156 - 49219097
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||| || || ||||||    
T  49219156 ttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttat 49219097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 4071892 - 4071830
Alignment:
Q  92 aacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtt 154  Q
    |||||||||||||||||||||||  |||||||| |||||| ||||| |||||| || ||||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatagtt 4071830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 13949903 - 13949949
Alignment:
Q  91 aaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13949903 aaacaacttatagcttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 927494 - 927441
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| |||||| ||||||||||||||||| || |||||| ||||||||||||    
T  927494 cttatgcaaacaagttatagcttatatgaaaacagtttgactttatttcatctt 927441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 42866108 - 42866047
Alignment:
Q  62 ttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||||||| ||||||| | | ||||||||||||||||||||||||||| ||| || |||||    
T  42866108 ttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 54325093 - 54325190
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgttta 185  Q
    |||||| | |||||||||||||||||| || |||||| |||||| ||||| ||| || || ||||||| | ||  ||||||||||||| |||| ||||    
T  54325093 tgaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataagtattta 54325190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 2996591 - 2996531
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||| ||||||| ||| |||||||||  ||||| ||||| ||||||    
T  2996591 cttatgaaaacaacttataacttatataaaaacaatttgactgtattttatcttatgttat 2996531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 7694036 - 7694116
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttc 138  Q
    ||||||||||||  |||| || | |||||||||||||| |||||||||||||  ||| || |||||| | |||||||||||    
T  7694036 ttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgacttcatttcatcttc 7694116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 10192298 - 10192242
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||  ||||| ||||||    
T  10192298 tgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttat 10192242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 53626794 - 53626734
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||| |||||||||||||||||| || |||||  |||||| ||||| ||||||    
T  53626794 cttatgaaaacagcttatagcttatatgaaaacattttgaatttattttatcttttgttat 53626734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 53943650 - 53943594
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| |  |||||||||| ||||||||||||| ||||||||||    
T  53943650 ttatttccataagctctccatgacaacttatgtaaacaacttatagtttatatgaaa 53943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 25885879 - 25885824
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||||||||||||| | |||| |||||| || |||||| |||||    
T  25885879 aacttatgaaaacaacttatagcttacacgaaaacaatttaactttattttatctt 25885824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 30207623 - 30207662
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  30207623 cttatgaaaacaacttatagcttatatgaaaacagtttga 30207662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 32920450 - 32920505
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||||||||||||||| ||| ||| | ||||||| |||||| |||||    
T  32920450 aacttatgaaaacaacttatagcttctattaaaacgatttgactttattttatctt 32920505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 24444056 - 24444026
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||    
T  24444056 cttatgaaaacaacttatagcttatatgaaa 24444026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 927312 - 927263
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||| |||||||||||||| |||||||| || ||||||||| ||||||    
T  927312 aacttaagaaaacaacttataacttatatggaaacaatttgactttattt 927263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 7368090 - 7368155
Alignment:
Q  67 taagttctcaagaacaacttatgaaaacaacttata-gcttatatgaaatcaatttgacgttattt 131  Q
    |||| |||| |||| | |||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  7368090 taagctctctagaatagcttatggaaacaacttataagcttatatgaaaacaatttgactttattt 7368155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 11842232 - 11842203
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||||||||||||||||||||    
T  11842232 ttatgaaaacaacttatagcttatatgaaa 11842203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 19154790 - 19154725
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    |||||||| ||||||||| || | | | ||||||||||  ||||||||||||||||| ||||||||    
T  19154790 ttatttccctaagttctctaggataccgtatgaaaacagtttatagcttatatgaaagcaatttga 19154725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 24091483 - 24091434
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||||  |||||||||||||||||  |||||||| ||||||    
T  24091483 aacttatgaaaacagtttatagcttatatgaaaataatttgactttattt 24091434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 26747428 - 26747485
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttat-agcttatatgaaa 114  Q
    |||||||||||||||||  || | |||| ||||||||||||||| |||||||||||||    
T  26747428 ttatttccataagttctttaggataactaatgaaaacaacttataagcttatatgaaa 26747485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 29778813 - 29778776
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaattt 121  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  29778813 cttatgaaaacaacttacagcttatatgaaaacaattt 29778776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 30024704 - 30024627
Alignment:
Q  98 ttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    ||||||||||||||||| |||||| || |||||| ||||| |||||| || |||  || ||||| || ||||||||||    
T  30024704 ttatagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatga 30024627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 8130192 - 8130132
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||  |||||||||||||||||  |||||||| |||| | ||||| ||||||    
T  8130192 cttatgaaaacagtttatagcttatatgaaaataatttgactttatgttatcttttgttat 8130132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 11802552 - 11802492
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| |||||||| ||| |  |||||||| |||||| ||||| ||||||    
T  11802552 cttatgaaaacaacttgtagcttatgtgagaaaaatttgactttattttatcttttgttat 11802492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 24160541 - 24160577
Alignment:
Q  78 gaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  24160541 gaacagcttatgaaaacaacttatagcttacatgaaa 24160577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 49086007 - 49085947
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||| ||| |||||||  | |||||| |||||| ||||| ||||||    
T  49086007 cttatgaaaacaacttataacttgtatgaaaatagtttgacattattttatcttttgttat 49085947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 37526225 - 37526281
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  37526225 ttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatgaaa 37526281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 37588386 - 37588442
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  37588386 ttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 37588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 19177499 - 19177406
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||| |||||||||||||||||||||||||| || || ||| | |||| |||||||||| | || ||||||| | ||| |||||||||||||    
T  19177499 aacttacgaaaacaacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatga 19177406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 32172671 - 32172550
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||||||||||| ||||||||||||||| || ||| ||||| | |||| ||||| |||| | || ||||||| | ||| ||| ||| ||||| ||| | |    
T  32172671 cttatgaaaacagcttatagcttatatgtaaacaacttgacttcattttatcttttgttgtagaaatagtttatacataagctcttgtatgataagcgct 32172572  T
Q  184 tatgctgtgagcacttaattat 205  Q
    |||||||| ||| |||||||||    
T  32172571 tatgctgtaagcgcttaattat 32172550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 9703290 - 9703344
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatct 136  Q
    |||||||||||||||||| ||||||||||||||| | |||||| |||||| ||||    
T  9703290 aacttatgaaaacaacttgtagcttatatgaaatgagtttgactttattttatct 9703344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 583836 - 583885
Alignment:
Q  95 aacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||| || |||||| |||||| ||||||||||||    
T  583836 aacttatagcttatatgaaaacagtttgactttattttatcttctgttat 583885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 10272483 - 10272536
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||||||||||||| |||| ||||||||| | |||| |||||    
T  10272483 cttatgaaaacaacttatagcttatacgaaaacaatttgacttaattttatctt 10272536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 29588897 - 29588777
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||| |||||||  ||||||||||||||||| ||||||  | |||||| || || |||||| || |||| || | ||| ||||||||||| | |||||||    
T  29588897 cttacgaaaacactttatagcttatatgaaaacaatttt-cattattttatattttgttatagaaatagcttatacataagcacttatataaaaagtgtt 29588799  T
Q  184 tatgctgtgagcacttaattat 205  Q
    |||||| | ||| |||||||||    
T  29588798 tatgctataagcgcttaattat 29588777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 31030156 - 31030229
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||| |||| || ||| |||| |||||| ||||||||||||||||| | ||| ||||| ||||||    
T  31030156 ttatttccataagctctccaggacagcttaggaaaactacttatagcttatatgataacaacttgactttattt 31030229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 37690662 - 37690719
Alignment:
Q  58 ttatttccataagttctcaagaacaactt-atgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| | || ||||| ||||||||||||||||||||||||||||    
T  37690662 ttatttccataagctctccataataactttatgaaaacaacttatagcttatatgaaa 37690719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 9202774 - 9202853
Alignment:
Q  58 ttatttccataagttct-caagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| |||||||||| |||||  |||||||||||||| ||||| |||||||||||| |||||| || |||||| |||||    
T  9202774 ttattttcataagttcttcaagat-aacttatgaaaacagcttattgcttatatgaaaacaatttaactttattttatctt 9202853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14295524 - 14295464
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||| ||||||| |||||||||||||||||| || |||||| |||||| ||||| ||||||    
T  14295524 cttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttat 14295464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 32059642 - 32059694
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||| |||||||||||||||||| || |||||| |||||| |||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatctt 32059694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 36539771 - 36539711
Alignment:
Q  77 agaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||| ||||||| ||||||||||||||||||||||||| ||  ||||| |||||| |||||    
T  36539771 agaataacttataaaaacaacttatagcttatatgaaaacaggttgactttattttatctt 36539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 39823173 - 39823233
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| ||||||||||||||  | |||||| |||||| ||||| ||||||    
T  39823173 cttatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgttat 39823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 6738458 - 6738564
Alignment:
Q  85 ttatgaaaacaacttatagc--ttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgt 182  Q
    ||||||||||| ||||||||  ||| ||||||  |||||||| ||||||  |||| | ||||||| |||| || | ||| || |||||||||| ||||||    
T  6738458 ttatgaaaacagcttatagcatttagatgaaaagaatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgt 6738557  T
Q  183 ttatgct 189  Q
    |||||||    
T  6738558 ttatgct 6738564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 19138771 - 19138810
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  19138771 cttatgaaaacaacttatagcttatctgaaaacaatttga 19138810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 35960431 - 35960341
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    ||||||||| |||||||||| ||||||||||| | |||||| |||||| ||||| | |||| || ||||||| ||||| |  ||||||||||    
T  35960431 cttatgaaatcaacttatagtttatatgaaat-agtttgactttattttatcttttattatagaaatagtttatgcataaatacttatatga 35960341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 41957477 - 41957540
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaattt 121  Q
    |||||| |||||||||||||| | | |||||||||||| |||||| |||| |||||| ||||||    
T  41957477 ttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaattt 41957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 9927596 - 9927550
Alignment:
Q  91 aaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||| |||||||||||| ||||||||||| |||| |||||    
T  9927596 aaacaacttatcgcttatatgaaaacaatttgacgtaattttatctt 9927550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 10303819 - 10303748
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagttt 155  Q
    |||||||||||||||||  ||| ||| |||||| ||||||||| |||||| ||||| |||||| || |||||||    
T  10303819 aacttatgaaaacaact--taggttaaatgaaaacaatttgactttattttatcttttgttatagaaatagttt 10303748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 14961962 - 14961920
Alignment:
Q  72 tctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||| | |||||||||||||||||||||| ||||||||||    
T  14961962 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 14961920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 18875402 - 18875332
Alignment:
Q  61 tttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||| |||| || | | ||||| |||||| |||||| ||| ||||||||||||||||| ||||||    
T  18875402 tttccataagctctccaggatatcttattaaaacagcttataacttgtatgaaatcaatttgactttattt 18875332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 29054925 - 29054887
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29054925 ttatggaaacaacttatagcttatatgaaagcaatttga 29054887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 42181142 - 42181204
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||| || |||||||||||||||||||||||| | ||||||| || ||| ||||| ||||||    
T  42181142 aacttgtgcaaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttat 42181204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 37063146 - 37063231
Alignment:
Q  104 cttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtttatgct 189  Q
    |||||||||||  | |||||| |||||| ||||| |||||| || ||||||| | ||| |||| ||||||||||||  ||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgct 37063231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 40120134 - 40120069
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagt 153  Q
    |||||||||| |||||||||||||||| ||||||||  | |||| ||||| ||| ||||| |||||    
T  40120134 tgaaaacaacctatagcttatatgaaaacaatttgatttgattttatcttttgtaattgaaatagt 40120069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 41277402 - 41277455
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||| || ||||||||||| || |||||| |||||| |||||    
T  41277402 cttatgaaaacaacttttaacttatatgaaaacagtttgactttattttatctt 41277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 6183488 - 6183432
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| | |||| |||||||| ||| ||||||||||| ||||||    
T  6183488 ttatttccataagctctccaaaacagcttatgaatacagcttatagcttacatgaaa 6183432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 6587159 - 6587195
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatt 120  Q
    |||||||||||||||||||||||||| |||| |||||    
T  6587159 cttatgaaaacaacttatagcttatacgaaaacaatt 6587195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 18857452 - 18857520
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatag 152  Q
    |||||||||||| ||||||| |||||  ||| ||||||||| |||||| ||| | ||||||||| ||||    
T  18857452 cttatgaaaacagcttatagattatagaaaaacaatttgactttattttatcgtgtgttattgaaatag 18857520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 26390816 - 26390872
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| || | |||||| |||| || ||||||||||||||||||    
T  26390816 ttatttccataagctctccaggataacttaggaaaccatcttatagcttatatgaaa 26390872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 34205257 - 34205217
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    ||||||||||||||||||||||||||| |||  ||||||||    
T  34205257 cttatgaaaacaacttatagcttatataaaaataatttgac 34205217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 27593 - 27489
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgttt 184  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||| || |||  || | ||| |||||||| |||| ||| | ||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagctt 27494  T
Q  185 atgct 189  Q
    |||||    
T  27493 atgct 27489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 12972870 - 12972754
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtttatg 187  Q
    |||||| ||||||||||||| |||||| || ||| |  |||||||||||||||||||||| |||| || | ||| ||||||||||||| || || |||||    
T  12972870 tgaaaataacttatagcttacatgaaaccagtttaattttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatg 12972771  T
Q  188 ctgtgagcacttaatta 204  Q
    || | ||| ||||||||    
T  12972770 ctataagcgcttaatta 12972754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 34770910 - 34770819
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||| ||||| ||| || || ||||||| | ||| |||||||| ||||    
T  34770910 cttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcacttacatga 34770819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 12361236 - 12361157
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||| || ||||  ||| |||||||||||||| |||||||||||||||||| ||||||||| | |||| |||||    
T  12361236 ttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctt 12361157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 31705129 - 31705073
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||  ||||||| ||| |||||||||||| ||||||||||||||||||    
T  31705129 ttatttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaa 31705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 9834841 - 9834879
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttg 122  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9834841 cttatgaaaacaacttatagcttatatgaaaacaatttg 9834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 787156 - 787217
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtta 143  Q
    ||||||||||||||  ||||||||||||||| | ||||||||| |||||| ||||| |||||    
T  787156 aacttatgaaaacagtttatagcttatatgataacaatttgactttattttatcttatgtta 787217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 10727209 - 10727124
Alignment:
Q  90 aaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    ||||||||||||| ||||| ||||| || |||||  |||||||||||| || ||| || |||| || ||||| |||||||||||||    
T  10727209 aaaacaacttataacttatgtgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatga 10727124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 29973125 - 29973052
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||  ||||||| | | ||||||||||||||||||||||||| |||||  | |||||| ||||||    
T  29973125 ttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 1470909 - 1470961
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||| ||||||||||||||||||  |||||||| |||||| |||||    
T  1470909 ttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatctt 1470961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 7645996 - 7645956
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  7645996 cttatgaaaacaacttatagcttacatgaaaacaatttgac 7645956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 42597419 - 42597359
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||||||  |||||| |||||| || |||||| ||||| ||||||    
T  42597419 cttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttat 42597359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 6509329 - 6509408
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||| ||||| |||| || | | |||||||||||| |||||||||||||| ||  ||||||||| |||||| |||||    
T  6509329 ttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttattttatctt 6509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 11059747 - 11059793
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  11059747 cttatgaaaacaacctatagcttatatgaaa-caatttgaccttattt 11059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 34551164 - 34551098
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||| |||||| |||| || | |||||| |||||||||||||| |||| |||||| |||||||||    
T  34551164 ttattttcataagctctccaggataacttaagaaaacaacttataacttaaatgaaaacaatttgac 34551098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 35869855 - 35869825
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||    
T  35869855 cttatgaaaacaacttatagcttatatgaaa 35869825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 13652259 - 13652142
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    |||||||| |||| |||| |||| | ||||| ||||||| ||||| ||||||||||| |||||| || | ||| |||||| || ||| || |||| || |    
T  13652259 ttatttccttaagctctccagaatagcttataaaaacaatttataacttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttat 13652160  T
Q  158 gcatgagcacttatatga 175  Q
     ||| |||||||| ||||    
T  13652159 acataagcacttagatga 13652142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 13710902 - 13710785
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    |||||||| |||| |||| |||| | ||||| ||||||| ||||| ||||||||||| |||||| || | ||| |||||| || ||| || |||| || |    
T  13710902 ttatttccttaagctctccagaatagcttataaaaacaatttataacttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttat 13710803  T
Q  158 gcatgagcacttatatga 175  Q
     ||| |||||||| ||||    
T  13710802 acataagcacttagatga 13710785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 31862537 - 31862448
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattga 147  Q
    |||||| |||||| |||| || | |||||||||||||| ||||||||||||| || |  | |||||| |||| | ||||| |||||||||    
T  31862537 ttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatcttttgttattga 31862448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 2093294 - 2093234
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattga 147  Q
    ||||||||||||||||||||| | |||| | ||||||| |||||| ||||| | |||||||    
T  2093294 atgaaaacaacttatagcttaaaagaaaaccatttgactttattttatcttttattattga 2093234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 3269708 - 3269652
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| |||||  ||||||||| ||| |||||| ||||| ||||||    
T  3269708 tgaaaacaacttatagattatacaaaatcaattcgactttattttatcttgtgttat 3269652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 8062542 - 8062502
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    ||||||| |||| |||||||||||||||||| |||||||||    
T  8062542 cttatgagaacatcttatagcttatatgaaaacaatttgac 8062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 12132853 - 12132821
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||| ||||||||||||||||||    
T  12132853 aacttatgaaaacagcttatagcttatatgaaa 12132821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 30627929 - 30627977
Alignment:
Q  59 tatttccataagttctcaagaacaacttatgaaaacaacttatagctta 107  Q
    |||||||||||| |||| |  | ||||||||||||||||||||||||||    
T  30627929 tatttccataagctctctaagataacttatgaaaacaacttatagctta 30627977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 31884612 - 31884576
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatt 120  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  31884612 cttatgaaaacaatttatagcttatatgaaaacaatt 31884576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 35298529 - 35298621
Alignment:
Q  84 cttatgaaaacaacttatagcttata-tgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||||||||||||||||| ||||| ||||| |  |||| | |||||| ||||| ||||| ||| |||| || | ||| |||||||||||||    
T  35298529 cttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagcacttatatga 35298621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 39268530 - 39268586
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| |||| | |||||||||||| ||| || |||||||||||    
T  39268530 ttatttccataagctctctagaaaagcttatgaaaacagcttttaacttatatgaaa 39268586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 43704430 - 43704470
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  43704430 cttatgaaaacaacttatagtttatatgaaaacagtttgac 43704470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 14548747 - 14548803
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  14548747 ttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 14548803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 23315670 - 23315591
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||| |||  |||| | |||||| ||||| |||||||| ||||||||| ||||||||| |||||| |||||    
T  23315670 ttatttccataagctctttagaatagcttatggaaacatcttatagcctatatgaaaacaatttgactttattttatctt 23315591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 2318689 - 2318623
Alignment:
Q  58 ttatttccataagttctc-aagaacaacttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||||| ||||| |||| ||||| ||||||| |||||||||||||| |||||||||| ||||||||    
T  2318689 ttatttctataagctctccaagaataacttataaaaacaacttatagtttatatgaaaacaatttga 2318623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 27792889 - 27792799
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||||||||||||  |||||||||||||  | |||||| |||||| ||||| |||| |||| |||| || | ||| |||||||||||||    
T  27792889 ttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatga 27792799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 38462299 - 38462194
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    ||||||||||||  ||||||| ||||||||| || |||||| |||||| ||||| || ||| || |||| || |  || | ||||||||||| |||||||    
T  38462299 cttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtt 38462200  T
Q  184 tatgct 189  Q
    ||||||    
T  38462199 tatgct 38462194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 10101528 - 10101588
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| || ||||||||||| |||||| || |||||| ||||| ||||||    
T  10101528 cttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttat 10101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 10212453 - 10212513
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| || ||||||||||| |||||| || |||||| ||||| ||||||    
T  10212453 cttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttat 10212513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14145930 - 14145870
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||| |||||||||| |||| |||| |||||| || |||||| ||||||||||||    
T  14145930 cttatgaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttat 14145870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 21872323 - 21872375
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatct 136  Q
    ||||||||||||||||||||||||||| |||  |||||||| |||||| ||||    
T  21872323 cttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttatct 21872375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 32109352 - 32109392
Alignment:
Q  74 tcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  32109352 tcaaggacaacttatgaaaacaacttatagcttgtatgaaa 32109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 32555031 - 32555091
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    |||| ||||||||||||||||||||||| ||||  |||||||| |||||| ||||| ||||    
T  32555031 aactcatgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgtt 32555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 40122805 - 40122872
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatag 152  Q
    ||||| ||||||||||||||||| ||||||| || |||||| |||||| ||||| ||||||||| ||||    
T  40122805 cttataaaaacaacttatagctt-tatgaaaacagtttgactttattttatcttttgttattgaaatag 40122872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 10540544 - 10540591
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||||||||||||| |||||| |||| |||||||| ||||||    
T  10540544 cttatgaaaacaacttatagtttatataaaattaatttgactttattt 10540591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 12923375 - 12923430
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| ||||||||||||||||||||| |||| || |||||| |||||| |||||    
T  12923375 aacttaggaaaacaacttatagcttataagaaagcagtttgactttattttatctt 12923430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 28779368 - 28779322
Alignment:
Q  90 aaaacaacttatagcttatatgaaatcaatttgacgttatttcatct 136  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||    
T  28779368 aaaacaacttatagcttatatgaaaatagtttgactttatttcatct 28779322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 36139889 - 36139843
Alignment:
Q  91 aaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||||||||| ||||||| |||||| |||||| |||||    
T  36139889 aaacaacttatagcttatacgaaatcagtttgactttattttatctt 36139843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 41057056 - 41057026
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||    
T  41057056 cttatgaaaacaacttatagcttatatgaaa 41057026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 48397661 - 48397611
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||||||||||| || ||| ||||||||| |||||| |||||    
T  48397661 atgaaaacaacttatagcttaaataaaaacaatttgactttattttatctt 48397611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 48807738 - 48807696
Alignment:
Q  72 tctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||| |||| ||||||||||||||||||||||||| |||||||    
T  48807738 tctctagaataacttatgaaaacaacttatagcttctatgaaa 48807696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 19679576 - 19679511
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatag 152  Q
    |||||||||||||||| |||||||||||||| || ||  ||| || ||||| ||||| ||||||||    
T  19679576 atgaaaacaacttatatcttatatgaaatcagttcgattttagtttatcttttgttactgatatag 19679511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 33046842 - 33046887
Alignment:
Q  65 cataagttctcaagaacaacttatgaaaacaacttatagcttatat 110  Q
    |||||||||||  | ||| |||||||||||||||||||||||||||    
T  33046842 cataagttctcctgtacagcttatgaaaacaacttatagcttatat 33046887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 48364934 - 48364991
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||| || || |||||| ||||||||| |||||| ||||| ||||||    
T  48364934 atgaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 1217833 - 1217889
Alignment:
Q  65 cataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaattt 121  Q
    |||||||||||||| | | |||||||||||| |||||| |||| |||||| ||||||    
T  1217833 cataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaattt 1217889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 10357451 - 10357391
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| || |||||||||||  ||||| || |||||| ||||| ||||||    
T  10357451 cttatgaaaacaacttgtatcttatatgaaaaaaatttaacattattttatcttttgttat 10357391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 25776157 - 25776114
Alignment:
Q  62 ttccataagttct-caagaacaacttatgaaaacaacttatagct 105  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  25776157 ttccataagttcttcaaga-caacttatgaaaacaacttatagct 25776114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 33307652 - 33307728
Alignment:
Q  104 cttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagt 180  Q
    |||||||||||  |||||||| ||||||||| || ||||| ||| |||| || | ||| ||||||||||||| ||||    
T  33307652 cttatatgaaaataatttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgataagt 33307728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 35450605 - 35450561
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||||||||||||| |||| |||||| || ||||||    
T  35450605 atgaaaacaacttatagcttataagaaaacaattttactttattt 35450561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 37788878 - 37788818
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||| ||||| ||||  |||| ||| |||||| ||||| ||||||    
T  37788878 cttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttat 37788818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 42084303 - 42084363
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||| |||||| ||| | ||||||    
T  42084303 cttatgaaaacaactaatagcttatatcaaaacaagttgacattattttatcctttgttat 42084363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 43875666 - 43875638
Alignment:
Q  84 cttatgaaaacaacttatagcttatatga 112  Q
    |||||||||||||||||||||||||||||    
T  43875666 cttatgaaaacaacttatagcttatatga 43875638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 44374703 - 44374787
Alignment:
Q  91 aaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||| || ||| || ||||||| ||||||||| |||||| ||||| |||||  ||||||| || | ||| |||||||||||||    
T  44374703 aaacaaattttagattgtatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatga 44374787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 45590684 - 45590652
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||||||||||| |||||||||||    
T  45590684 aacttatgaaaacaacttatatcttatatgaaa 45590652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 51197790 - 51197826
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttg 122  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  51197790 tatgaaaacaacttataacttatatgaaaacaatttg 51197826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 51510219 - 51510271
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatat 110  Q
    ||||||||||||| |||| |  | |||||||||||||||||||||| ||||||    
T  51510219 ttatttccataagctctccacgataacttatgaaaacaacttatagtttatat 51510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 11513942 - 11513858
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    ||||||||| |||||||| |  | | ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||    
T  11513942 ttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 11344340 - 11344435
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    ||||||||| ||||||||| ||||||| ||||||||| || ||| ||||| |||||| || |||  || ||||| ||||||||||| |||||||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttatataacaagtgtt 11344435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 35755552 - 35755658
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtg 181  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||  | ||   |||| || |||| || | ||| | |||||||| ||||||||    
T  35755552 aacttatgaaaacaacttatagcttacatgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacacttatacgacaagtg 35755651  T
Q  182 tttatgc 188  Q
    |||||||    
T  35755652 tttatgc 35755658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 37053609 - 37053515
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtg 181  Q
    ||||||| |||||||| ||||||||||| || |||||| |||||| || ||||||||| || ||||| | | ||| ||||||||||||| |||||    
T  37053609 atgaaaaaaacttataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtg 37053515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 10143190 - 10143070
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||||||||| |||||||||||||||| ||| || |||||| | |||| ||||| |||||| || |||  || | ||| |||||||||  || |||| ||    
T  10143190 cttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttattcgataagtttt 10143091  T
Q  184 tatgctgtgagcacttaatta 204  Q
    | |||||| ||||||||||||    
T  10143090 tgtgctgtaagcacttaatta 10143070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 14666562 - 14666506
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| ||||| ||||||    
T  14666562 tgaaaacaacttataacttatatgaaatcagtttgactttattttatcttttgttat 14666506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 22681211 - 22681275
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttg 122  Q
    |||||||||||||||||| || | |  ||||||||||| |||||||||||||||||| |||||||    
T  22681211 ttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttg 22681275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 6993750 - 6993829
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| |||||| ||||||| | | |||||||||||||| |||||||||||||||   |||||||| |||||| |||||    
T  6993750 ttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaatataatttgaccttattttatctt 6993829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 28803563 - 28803618
Alignment:
Q  89 gaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||| ||||||||||||||||| |||||| |||||| ||||| ||||||    
T  28803563 gaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttat 28803618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 18066146 - 18066096
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcat 134  Q
    |||||||||||| |||||||||||||||||| |||||| || |||||||||    
T  18066146 cttatgaaaacagcttatagcttatatgaaaacaatttaactttatttcat 18066096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 29316801 - 29316895
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatag 152  Q
    |||||||||||||||||| |  | | || ||||||||| ||||||| |||| ||||| |||||| || |||||| |||||||||||  |||||||    
T  29316801 ttatttccataagttctccaagatagctgatgaaaacagcttatagattatgtgaaaacaatttaaccttattttatcttctgttaaagatatag 29316895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 5043612 - 5043665
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||| |||||||||||||| || |||||| |||||| |||||    
T  5043612 cttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatctt 5043665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 33942168 - 33942115
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||||||||||| |||||| || |||||| |||||| |||||    
T  33942168 cttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatctt 33942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 33944620 - 33944576
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgactttattt 33944576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 4550793 - 4550742
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||| |||||    
T  4550793 tatgaaaacaacttatagtttatatgaaaacagcttgacgttattttatctt 4550742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 29936021 - 29935974
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||| ||||||||||||| ||| || ||||||||||||||||    
T  29936021 cttatgaaaaaaacttatagcttacatggaaacaatttgacgttattt 29935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 40158755 - 40158696
Alignment:
Q  65 cataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||| |||| |||| |||||||||||||||||||| ||||||| |||| || ||||||    
T  40158755 cataagctctccagaataacttatgaaaacaacttattgcttatacgaaaacagtttgac 40158696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 42621401 - 42621452
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttata 109  Q
    |||||| || |||||||| |||| |||||||||||||| |||||||||||||    
T  42621401 ttattttcacaagttctccagaataacttatgaaaacagcttatagcttata 42621452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 1625918 - 1625868
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcat 134  Q
    ||||||||||||||||||| |||||| |||| |||||| || |||||||||    
T  1625918 cttatgaaaacaacttataacttatacgaaaacaatttaactttatttcat 1625868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 7103541 - 7103624
Alignment:
Q  90 aaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||| |||||||||||||| ||| || |||||| |||||| ||||  ||||||  ||||||||||| ||| ||||| |||||||    
T  7103541 aaaacagcttatagcttatattaaaacagtttgactttattttatct--tgttataaatatagtttctacataagcacatatatga 7103624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 10285366 - 10285284
Alignment:
Q  89 gaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttat 171  Q
    |||||||||||||||||||||| ||| | ||||||| |||||| | ||| |||||| || ||| ||| || || |||||||||    
T  10285366 gaaaacaacttatagcttatataaaacctatttgacattattttaacttttgttatagaaatactttatgtattagcacttat 10285284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 13869120 - 13869186
Alignment:
Q  57 attatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    ||||||| ||| ||||||| || | |||||||||||||| ||||||||||| ||||||  |||||||    
T  13869120 attattttcattagttctccaggataacttatgaaaacagcttatagcttagatgaaaataatttga 13869186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 33192197 - 33192091
Alignment:
Q  98 ttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtttatgctgtgagcac 197  Q
    ||||| ||||||||||| || |||||| |||||| ||||| |||||| || ||||||| |  || ||||||| | ||| ||| ||||||||| | ||| |    
T  33192197 ttataacttatatgaaaacagtttgactttattttatcttatgttatagaaatagtttttatataagcacttgtgtgataagagtttatgctttaagcgc 33192098  T
Q  198 ttaatta 204  Q
    |||||||    
T  33192097 ttaatta 33192091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 35329884 - 35329962
Alignment:
Q  97 cttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatga 175  Q
    |||||||||||| ||||| ||  ||||| |||||| ||||| |||||| || ||||||| ||||| | |||||||||||    
T  35329884 cttatagcttatgtgaaagcagcttgactttattttatcttatgttatggaaatagtttatgcataaacacttatatga 35329962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 37276766 - 37276724
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    ||||||||||||||||||||| ||||||||||| || ||||||    
T  37276766 aacttatgaaaacaacttataacttatatgaaaacagtttgac 37276724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 39983360 - 39983330
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||    
T  39983360 cttatgaaaacaacttatagcttatatgaaa 39983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 1493564 - 1493669
Alignment:
Q  83 acttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgt 182  Q
    ||||||||||||| | |||||||||||||||| ||| | ||| |||||| ||||  |||||| || | ||||| |  || |||| |||||||| ||| ||    
T  1493564 acttatgaaaacagcatatagcttatatgaaaacaactagactttattttatctattgttatagaaagagtttataaataagcaattatatgataagagt 1493663  T
Q  183 ttatgc 188  Q
    ||||||    
T  1493664 ttatgc 1493669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 6167309 - 6167382
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||||||||||| | || | ||||| |||||| ||||||||||| | |||| |||||| || ||||||    
T  6167309 ttatttccataagttctccaaaatagcttataaaaacagcttatagcttaaacgaaagcaatttcactttattt 6167382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 17952753 - 17952850
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtg 181  Q
    |||||||||||| ||| ||||||||||||||  | |||||| |||||| ||||| |||||| || |||| || |  || ||| ||||||||| |||||    
T  17952753 cttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtg 17952850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 25800847 - 25800810
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaattt 121  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  25800847 cttatgaaaacagcttatagcttatatgaaaacaattt 25800810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 43141889 - 43141836
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||| ||||||||||||||| || ||||||||| ||| || |||||    
T  43141889 cttatgaaaacatcttatagcttatatggaaacaatttgactttactttatctt 43141836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 9750961 - 9750917
Alignment:
Q  87 atgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||||||||||||| |||| |||||| || ||||||    
T  9750961 atgaaaacaacttatagcttataagaaaacaatttaactttattt 9750917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 23143029 - 23143069
Alignment:
Q  83 acttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    |||||||||||||||| |||||||||| |||| ||||||||    
T  23143029 acttatgaaaacaactaatagcttataagaaaacaatttga 23143069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 23554819 - 23554859
Alignment:
Q  83 acttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    |||||||||||||||| |||||||||| |||| ||||||||    
T  23554819 acttatgaaaacaactaatagcttataagaaaacaatttga 23554859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 42907373 - 42907317
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||| | |||| |||||| || ||||||  |||||||||||    
T  42907373 tgaaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttat 42907317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 32386589 - 32386706
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    |||||| |||||| |||| || | |||| ||||||||||| |||| ||||||||||| ||||||||| |||||| ||||| | ||| ||| ||||| | |    
T  32386589 ttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatcttttcttagtgaaatagtctat 32386688  T
Q  158 gcatgagcacttatatga 175  Q
     ||| |||||||||||||    
T  32386689 acataagcacttatatga 32386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 33787772 - 33787868
Alignment:
Q  59 tatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagttt 155  Q
    |||||||||||| |||| |  | |||||||||||||| |||||| ||||||||||||||||||||| || ||| || || |||||| || |||||||    
T  33787772 tatttccataagctctccaagataacttatgaaaacagcttataacttatatgaaatcaatttgactttgttttatattttgttatagaaatagttt 33787868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 4006732 - 4006645
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttat 171  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||| ||| | |||||| || |||  || ||||| |||||||||    
T  4006732 cttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttat 4006645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 4248976 - 4248871
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||| ||||||| ||||| | |||||  ||||||||||||| |||||| ||||| ||||||||| |||| || |  || ||||||||||||||||| | |    
T  4248976 cttaggaaaacaccttattgtttatacaaaatcaatttgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgct 4248877  T
Q  184 tatgct 189  Q
    ||||||    
T  4248876 tatgct 4248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 281874 - 281960
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||| || |||| || | | |||||||| ||| |||||||||||||||||| ||| ||||| |||||| ||||| ||||||    
T  281874 ttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgttat 281960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 6310282 - 6310336
Alignment:
Q  90 aaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||    
T  6310282 aaaacaacttatagcttatatgaaaacaattagactttacttcatcttttgttat 6310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 29274281 - 29274334
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||  ||||||||||||||||| ||||||||| |||||| |||||    
T  29274281 cttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatctt 29274334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 1275193 - 1275137
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||| |||| || | ||| |||||||||| ||||||||||||||||||    
T  1275193 ttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaa 1275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 2117447 - 2117391
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||| ||||| |||| || | |||||||||||||||||||||| ||||||||||    
T  2117447 ttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaa 2117391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 2514742 - 2514615
Alignment:
Q  62 ttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcat 161  Q
    ||||| ||| |||| || ||| |||||||||| ||||||||||| |||| |||| | |||||| |||||| ||||| | |||| || |||| || | |||    
T  2514742 ttccaaaagatctccaggacagcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacat 2514643  T
Q  162 gagcacttatatgacaagtgtttatgct 189  Q
     |||||||| |||| |||  ||||||||    
T  2514642 aagcacttacatgataagcatttatgct 2514615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 5550148 - 5550105
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttgacgttat 129  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||    
T  5550148 tatgaaaacagcttatagcttatatgaaaacaatttgactttat 5550105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 7485120 - 7485167
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||||||||||||||||||||||||  ||||| || ||||||    
T  7485120 cttatgaaaacaacttatagcttatatgaaaaaaatttaactttattt 7485167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 9093582 - 9093661
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| | ||||||||| |  ||| |||||||||||| ||||||||||||| |||| |||||| || |||||| |||||    
T  9093582 ttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatctt 9093661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 7714025 - 7713923
Alignment:
Q  102 agcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtttatgctgtgagcacttaa 201  Q
    ||||||||||||| ||||||||| |||||| ||||| ||||||  |  |||||| | ||| ||| ||||||||| | ||| ||||||| | ||||| |||    
T  7714025 agcttatatgaaaacaatttgactttattttatcttttgttatgaaagtagtttatacataagctcttatatgataggtggttatgctataagcacgtaa 7713926  T
Q  202 tta 204  Q
    |||    
T  7713925 tta 7713923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 22742386 - 22742324
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||| |||| | |||||||||||||||||| ||||||||| |||||| ||| | ||||||    
T  22742386 aacttataaaaatagcttatagcttatatgaaaacaatttgactttattttatcctttgttat 22742324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 25100061 - 25100011
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcat 134  Q
    ||||||||||||||||||| ||| ||||||| |||||||||  ||||||||    
T  25100061 cttatgaaaacaacttataacttctatgaaaacaatttgactctatttcat 25100011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 9732506 - 9732389
Alignment:
Q  72 tctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttat 171  Q
    ||||||| | ||||| ||||||||||||||| |||  |||||| ||||||||| | |||| ||| | |  ||| || |||| || ||||| |||||||||    
T  9732506 tctcaaggataacttgtgaaaacaacttataccttgcatgaaaacaatttgacttaattttatcctttaatatagaaatagcttatgcataagcacttat 9732407  T
Q  172 atgacaagtgtttatgct 189  Q
    |||  || ||||||||||    
T  9732406 atggtaaatgtttatgct 9732389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 1403014 - 1402954
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||| |||||||||||||||||  | ||| || |||||| ||||| ||||||    
T  1403014 cttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttat 1402954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 2112217 - 2112166
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||||||||| |||||||||| |||||| || |||||| |||||    
T  2112217 ttatgaaaacaacttatagtttatatgaaa-caatttaactttattttatctt 2112166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 8035198 - 8035230
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||| ||||||||||||||    
T  8035198 aacttatgaaaacaacttctagcttatatgaaa 8035230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 20671918 - 20671970
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||| ||| |||||||| |||| ||||||||| |||||| |||||    
T  20671918 ttatgaaaacaatttaaagcttatacgaaaacaatttgactttattttatctt 20671970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 7218100 - 7218173
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||| ||||||||||| || | |  |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  7218100 ttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 25006086 - 25006146
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||| | | ||||||||    
T  25006086 cttatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttat 25006146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 30371166 - 30371106
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||| ||||| ||||||    
T  30371166 cttatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttat 30371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 25479625 - 25479546
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| |||||| |||| || | | ||||||||||||||||||||| ||||||||  |||||||||||||||| |||||    
T  25479625 ttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatctt 25479546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 27738232 - 27738290
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||||    
T  27738232 cttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 4363684 - 4363788
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||||||||| |  ||||||||||||||||| || |||||| |||||| ||||| ||||| | | ||||  | | ||| |||||||||||||||||||||    
T  4363684 cttatgaaaataggttatagcttatatgaaaacagtttgacattatttaatcttttgtta-taaaatagagtatacataagcacttatatgacaagtgtt 4363782  T
Q  184 tatgct 189  Q
    ||||||    
T  4363783 tatgct 4363788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 15361753 - 15361676
Alignment:
Q  62 ttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttct 139  Q
    ||||||||  ||||||||| | |||||||||||| ||||||||||||||||||  |||||||| ||| || |||||||    
T  15361753 ttccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaataatttgactttactttatcttct 15361676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 28467359 - 28467419
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||| ||||| ||||||    
T  28467359 cttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttat 28467419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 49517088 - 49517028
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||| ||||||||||| |||||| ||||||||| |||||| ||||| ||||||    
T  49517088 cttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttat 49517028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 5592711 - 5592790
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||| |||||| ||| ||||  | ||||||||||||||||||||||||||||| | ||||| ||| |||||| |||||    
T  5592711 ttattttcataagctcttaagactagcttatgaaaacaacttatagcttatatgacaacaattcgactttattttatctt 5592790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 17269268 - 17269221
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  17269268 cttatgaaaacaacttattgcttatatgaaaacaatttgactttattt 17269221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 3224467 - 3224401
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||| ||||||||||| |||| | ||||| |||||| | ||||||||||||||| ||||||||||    
T  3224467 ttattttcataagttctctagaatagcttataaaaacaccctatagcttatatgaattcaatttgac 3224401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 6932987 - 6933073
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||| |||  || |||||||||||||| |||| ||| ||| ||||||| ||||||||| |||||| || || ||||||    
T  6932987 ttatttccataagctcttcaggacaacttatgaaaagaactaataacttctatgaaaacaatttgactttattttatgttttgttat 6933073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 30259540 - 30259642
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgttt 184  Q
    ||||| ||||| |||||||||||||| ||| || |||||| |||||| || || |||||| || |||| || ||||| ||||||| ||||| |||||| |    
T  30259540 ttatgcaaacagcttatagcttatatcaaagcagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtgtgt 30259639  T
Q  185 atg 187  Q
    |||    
T  30259640 atg 30259642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 17422992 - 17423037
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||    
T  17422992 tatgaaaacaacttatagcttatatgaaatcagcttgactttattt 17423037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 31517793 - 31517850
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    ||||||| ||| ||||||||||||||||||||||||| || |||||| ||||| ||||    
T  31517793 ttatgaagacagcttatagcttatatgaaatcaatttaactttattttatcttttgtt 31517850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 6659532 - 6659428
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgt-tatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgt 182  Q
    |||||||||||| |||||||||||||||||| | ||||||| | ||||| || || || ||| || |||| ||  |||| || |||||||||| ||||||    
T  6659532 cttatgaaaacatcttatagcttatatgaaagccatttgacttatatttgatgttttgctatagaaatagcttaggcataagaacttatatgataagtgt 6659433  T
Q  183 ttatg 187  Q
    |||||    
T  6659432 ttatg 6659428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 25005849 - 25005889
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  25005849 cttatgaaaacaacttatagcttatatgaaaacaagttgac 25005889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 7273992 - 7274051
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||| ||||| |||||| ||| ||||||| ||||||||| |||||||||||| ||||||    
T  7273992 ttatggaaacagcttataacttgtatgaaaacaatttgactttatttcatcttttgttat 7274051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 15360903 - 15360852
Alignment:
Q  93 acaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||||| || |||||| |||||| ||||| ||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttat 15360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 49282901 - 49282948
Alignment:
Q  59 tatttccataagttctcaagaacaacttatgaaaacaacttatagctt 106  Q
    |||||||||||  ||||||||||| |||||||||||||||| ||||||    
T  49282901 tatttccataatctctcaagaacagcttatgaaaacaacttgtagctt 49282948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 12564926 - 12564956
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||    
T  12564926 cttatgaaaacaacttatagcttatatgaaa 12564956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 26630507 - 26630421
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||| |||||| || | | | ||| ||||||  ||||||||||||||||| |||||| || ||||||||| || ||||||    
T  26630507 ttatttccatatgttctccaggatagcgtatcaaaacagtttatagcttatatgaaaacaattttactttatttcattttttgttat 26630421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29045964 - 29046002
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttg 122  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  29045964 cttatgaaaacaacttatagcttatatgagaacaatttg 29046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 36070270 - 36070208
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||||||||||||  |||  |||||| || |||||| ||||| ||||||    
T  36070270 aacttatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttat 36070208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 49557157 - 49557039
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgttta 185  Q
    |||||||||||||||||||||| |||||  | |||| || |||||| ||||| |||||| || |||  || | ||  ||||||||||||| ||||| |||    
T  49557157 tatgaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgatta 49557058  T
Q  186 tgctgtgagcacttaatta 204  Q
     | | | ||||||||||||    
T  49557057 cgttataagcacttaatta 49557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 51957409 - 51957471
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatt 120  Q
    |||||||  ||||||||| |||| ||||||||||||||| ||||| ||||||| ||| |||||    
T  51957409 ttatttctgtaagttctccagaataacttatgaaaacaatttataacttatataaaagcaatt 51957471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 5421972 - 5422025
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||| |||||||||||||||||||| |||| |||||||||  ||||| |||||    
T  5421972 cttatcaaaacaacttatagcttataagaaaacaatttgactatattttatctt 5422025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 8130454 - 8130409
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttat 129  Q
    ||||||||||||||||||||||||| ||||| || |||||| ||||    
T  8130454 cttatgaaaacaacttatagcttatgtgaaaacagtttgactttat 8130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 15515561 - 15515520
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttga 123  Q
    |||||||||||||||||||||||||||| |||| || |||||    
T  15515561 aacttatgaaaacaacttatagcttatacgaaaacattttga 15515520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 24915077 - 24915174
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagttt 155  Q
    |||||| || |||||||| |  ||| |||||||||||| |||||||| ||||  ||| |||||| || |||||| |||||||| ||| || |||||||    
T  24915077 ttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagttt 24915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 33527180 - 33527257
Alignment:
Q  65 cataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    |||||| |||| || | |||||||||||||| ||||||| |||||||||| || ||||||  ||||| ||||| ||||    
T  33527180 cataagatctcgaggataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgtt 33527257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 42556683 - 42556736
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||||||||||||||||| |||  | |||||  ||||||||||||    
T  42556683 cttatgaaaacaacttatagcttatataaaagtagtttgattttatttcatctt 42556736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 45999354 - 45999427
Alignment:
Q  98 ttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttat 171  Q
    ||||||||||||||||| || |||||| |||| | ||||| |||||| || |||| || | |||||||||||||    
T  45999354 ttatagcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacatgagcacttat 45999427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 4200247 - 4200187
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||| ||||||||  |||||||||||||||| ||| ||||| |||||| ||||| ||||||    
T  4200247 cttacgaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttat 4200187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 5924099 - 5924055
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttata 102  Q
    ||||||||||||| |||| || | |||||||||||||||||||||    
T  5924099 ttatttccataagctctctaggataacttatgaaaacaacttata 5924055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 6074492 - 6074432
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||| |||||||||| ||||||||||||||| || ||| || |||| ||||||| ||||||    
T  6074492 cttaagaaaacaactcatagcttatatgaaaacagtttaactttatatcatcttttgttat 6074432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 10581108 - 10581176
Alignment:
Q  63 tccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    ||||||||||| | | || | |||||||||||||||||||||||| ||||||  | |||||| ||||||    
T  10581108 tccataagttccccataatagcttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattt 10581176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 28689508 - 28689536
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||    
T  28689508 tatgaaaacaacttatagcttatatgaaa 28689536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 30257700 - 30257648
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||| |||||||||| || || |||||| |||||| |||||    
T  30257700 ttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatctt 30257648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 37241848 - 37241904
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||| |||||| |||| || | | |||||||||||||||| ||||||||||||||    
T  37241848 ttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatgaaa 37241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 1417282 - 1417222
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||| ||||| ||||||    
T  1417282 cttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttat 1417222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 9527142 - 9527244
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtt 183  Q
    |||||||||||||||||||| |||||||||| || |||||| |||||  ||||| |||||| |||||||  | |  || ||||||| ||||| |||||||    
T  9527142 cttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagtgtt 9527241  T
Q  184 tat 186  Q
    |||    
T  9527242 tat 9527244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 29363562 - 29363478
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    ||||||||||||| |||| || | ||||||||| |||| |||||| || |||||||| || |||||| |||||| ||||||||||    
T  29363562 ttatttccataagctctccaggataacttatgataacagcttataactaatatgaaaacagtttgactttattttatcttctgtt 29363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 38010758 - 38010694
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttg 122  Q
    |||||||||||||||||| || | |  ||||||||||| |||||||||||||||||| |||||||    
T  38010758 ttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttg 38010694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 3610797 - 3610895
Alignment:
Q  89 gaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcacttatatgacaagtgtttatg 187  Q
    |||||||||||||||||||||  ||| || |||| | | |||| ||||| |||| | || |||| || | ||| |||||||||||||||||||||||||    
T  3610797 gaaaacaacttatagcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttatg 3610895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 24895399 - 24895334
Alignment:
Q  59 tatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||||||||| |||| | || | ||| |||||||||||||||||||||||||||  ||||||||    
T  24895399 tatttccataagctctccacaatatcttgtgaaaacaacttatagcttatatgaaaataatttgac 24895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 24909707 - 24909642
Alignment:
Q  59 tatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    |||||||| ||| |||| | || | |||||||||||||||||||||||||||||||  ||||||||    
T  24909707 tatttccacaagctctccacaatatcttatgaaaacaacttatagcttatatgaaaataatttgac 24909642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 25507374 - 25507337
Alignment:
Q  77 agaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||| |||||||||||||||||||||||||||||||||    
T  25507374 agaataacttatgaaaacaacttatagcttatatgaaa 25507337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 28340896 - 28340949
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||| |||||||||||||||| | ||||||||| | ||||||||||    
T  28340896 cttatgaaaacagcttatagcttatatgacaacaatttgacttcatttcatctt 28340949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 30456503 - 30456560
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgtt 142  Q
    |||||||||| ||||||| ||||||||||| ||||||||| |||||| ||||| ||||    
T  30456503 ttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgtt 30456560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 44822003 - 44821930
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||||| ||||||||||| |||| | |||||||||||| |||||| ||||||  ||| ||||||||| ||||||    
T  44822003 ttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttattt 44821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 5006561 - 5006621
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||| ||||| ||||||||||| || |||||| |||||| ||||| ||||||    
T  5006561 cttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttat 5006621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 25558241 - 25558273
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||||    
T  25558241 aacttatgaaaacaacttatagcttatatgaaa 25558273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 25558439 - 25558471
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaa 114  Q
    |||||||||||||||||||||||||||||||||    
T  25558439 aacttatgaaaacaacttatagcttatatgaaa 25558471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 48157146 - 48157225
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    ||||||||||||| ||||  ||| | ||| ||||||||| ||||||||||||| ||| |||||| || |||||| |||||    
T  48157146 ttatttccataagatctcccgaatagcttgtgaaaacaaattatagcttatattaaaacaatttcactttattttatctt 48157225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 30496721 - 30496651
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagttt 155  Q
    ||||||||||||| ||||| ||||| |||| ||||||||| |||||| || || |||||| || |||||||    
T  30496721 ttatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaatagttt 30496651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 31002779 - 31002693
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcactta 170  Q
    ||||| |||||| ||||||||||||||||||  | |||||| |||||| ||||| |||  |||| ||||||| | ||| ||||||||    
T  31002779 cttatcaaaacagcttatagcttatatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataagcactta 31002693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 4572601 - 4572548
Alignment:
Q  99 tatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatag 152  Q
    |||||||||||||| ||||| ||||| |||||| ||||| |||||| |||||||    
T  4572601 tatagcttatatgatatcaaattgactttattttatcttttgttatagatatag 4572548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 12110378 - 12110325
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||| |||||||||||||  ||| ||||||||| |||||| |||||    
T  12110378 cttatgaaaacagcttatagcttataccaaaacaatttgactttattttatctt 12110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 18516303 - 18516348
Alignment:
Q  86 tatgaaaacaacttatagcttatatgaaatcaatttgacgttattt 131  Q
    |||| |||||||||||||||||||||||  ||||||||| ||||||    
T  18516303 tatggaaacaacttatagcttatatgaacacaatttgactttattt 18516348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 27548281 - 27548228
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||| ||||||||||| |||||| ||||| ||| |||||| |||||    
T  27548281 cttatgaaaacagcttatagcttaaatgaaaacaattagactttattttatctt 27548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 45813236 - 45813285
Alignment:
Q  88 tgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatctt 137  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||| |||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatctt 45813285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 2745335 - 2745419
Alignment:
Q  383 actgtgacacaagttgaagaagtgaaatgtattttgagactattgccggtttggttatgcaccatcttctcctctgtcgtcttca 467  Q
    |||||||||||||| |||||||||||||| || || ||| || | ||  ||||||||||||| || || | |||||| |||||||    
T  2745335 actgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcactatattattctctgttgtcttca 2745419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 8690424 - 8690484
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaa-aacaacttatagcttatatgaaatca 117  Q
    |||||||||||||||||| || | |||||||||| ||||  |||||||| |||||||||||    
T  8690424 ttatttccataagttctctaggataacttatgaagaacagtttatagctcatatgaaatca 8690484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 17989075 - 17989135
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttat 144  Q
    ||||||||||||| |||||| |||||||||| || |||||| |||||| || || ||||||    
T  17989075 cttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgttat 17989135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 31908378 - 31908414
Alignment:
Q  100 atagcttatatgaaatcaatttgacgttatttcatct 136  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  31908378 atagcttatatgaaagcaatttgactttatttcatct 31908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 39506000 - 39505944
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaa 114  Q
    ||||||||||||  |||| |||| | |||||||||||||||||  ||||||||||||    
T  39506000 ttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaaa 39505944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 39518847 - 39518807
Alignment:
Q  84 cttatgaaaacaacttatagcttatatgaaatcaatttgac 124  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  39518847 cttatgaaaacaacttaaagcttatatgcaaacaatttgac 39518807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 44151533 - 44151593
Alignment:
Q  85 ttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttatt 145  Q
    ||||||||||||||||||||||||||| || || ||| || |||||  ||||| |||||||    
T  44151533 ttatgaaaacaacttatagcttatatggaaacagttttactttattctatcttttgttatt 44151593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 6663 - 6791
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    ||||||||||||| |||  | || ||||||| |||||||||| || | | ||||||| ||||||||| | | || || || |||||| || ||||||| |    
T  6663 ttatttccataagctctgcataataacttatcaaaacaacttttaacctctatgaaaacaatttgacttaagtttattttttgttatagaaatagtttat 6762  T
Q  158 gcatgagcacttatatgacaagtgtttat 186  Q
     ||| ||||||||||||| ||||| ||||    
T  6763 acataagcacttatatgataagtgcttat 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 116582 - 116710
Alignment:
Q  58 ttatttccataagttctcaagaacaacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttct 157  Q
    ||||||||||||| |||  | || ||||||| |||||||||| || | | ||||||| ||||||||| | | || || || |||||| || ||||||| |    
T  116582 ttatttccataagctctgcataataacttatcaaaacaacttttaacctctatgaaaacaatttgacttaagtttattttttgttatagaaatagtttat 116681  T
Q  158 gcatgagcacttatatgacaagtgtttat 186  Q
     ||| ||||||||||||| ||||| ||||    
T  116682 acataagcacttatatgataagtgcttat 116710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 20199 - 20111
Alignment:
Q  82 aacttatgaaaacaacttatagcttatatgaaatcaatttgacgttatttcatcttctgttattgatatagtttctgcatgagcactta 170  Q
    ||||||||||||||||| ||||||||||||| | |  |||||| |||||| |||||  ||||| || ||||| | | ||| ||||||||    
T  20199 aacttatgaaaacaactaatagcttatatgataactgtttgactttattttatctttggttatagaaatagtatatacataagcactta 20111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University