View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_high_17 (Length: 274)
Name: NF4718_high_17
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 55896373 - 55896130
Alignment:
| Q |
19 |
cactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaa |
118 |
Q |
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| T |
55896373 |
cactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaa |
55896274 |
T |
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| Q |
119 |
gcagcaatcttgaccctgccatgatcggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattatagacac |
218 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896273 |
gcagaaatcttgacccagccatgatcggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattatagacac |
55896174 |
T |
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| Q |
219 |
aagcacacggttgcaagaaggaaccattagttatcctgtttctg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896173 |
aagcacacggttgcaagaaggaaccattagttatcctgtttctg |
55896130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 1028590 - 1028833
Alignment:
| Q |
19 |
cactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028590 |
cactggtcatacgatgaaacaagtggcaaattagacatagcatacatacatactggaataactgcaacaaataggtgggttgcttgggccatcaatccaa |
1028689 |
T |
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| Q |
119 |
gcagcaatcttgaccctgccatgatcggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattatagacac |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1028690 |
gcagcaatcttgacccggccatgatcggagcacaagctttggtggctattccacaagccagtggaagcccaaaagcctatacttcaaacattgtagacac |
1028789 |
T |
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| Q |
219 |
aagcacacggttgcaagaaggaaccattagttatcctgtttctg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028790 |
aagcacacggttgcaagaaggaaccattagttatcctgtttctg |
1028833 |
T |
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