View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_high_18 (Length: 264)
Name: NF4718_high_18
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 47177336 - 47177128
Alignment:
| Q |
31 |
ccatggtggtagttgtgatctggagagtccaatg-----tgagagcatgagg-tcccacattttgcttgcttaagcaggacaaaatggtcaccggaggaa |
124 |
Q |
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| T |
47177336 |
ccatggtggtagttgtgatctggagagtccaatgcaatgtgagagcatgagggtcccacattttgcttgcttaagcaggacaaaatggtcaccggaggaa |
47177237 |
T |
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| Q |
125 |
aagatattatgaacagtactattatatcatataacagctctcttatacaatacaataaatatccnnnnnnncaacagacagattttctcagagaagaatc |
224 |
Q |
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| T |
47177236 |
aagatattatgaa--------------catataacagctctcttatacaatacaataaatatcctttttttcaacatacatattttctcagagaagaatc |
47177151 |
T |
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| Q |
225 |
acttgcatatcttgctataatag |
247 |
Q |
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| T |
47177150 |
acttgcatatcttgctataatag |
47177128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 47169050 - 47169007
Alignment:
| Q |
196 |
caacagacagattttctcagagaagaatcacttgcatatcttgc |
239 |
Q |
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| T |
47169050 |
caacagacagattttctcacagaagaatcacttgcatatcttgc |
47169007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 47172349 - 47172309
Alignment:
| Q |
196 |
caacagacagattttctcagagaagaatcacttgcatatct |
236 |
Q |
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| T |
47172349 |
caacagacatattttctcagagaagaatcacttgcatatct |
47172309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 47169122 - 47169078
Alignment:
| Q |
98 |
agcaggacaaaatggtcaccggaggaaaagatattatgaacagta |
142 |
Q |
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| T |
47169122 |
agcaggacaaaatggtcactcaaggaaaatatattatgaacagta |
47169078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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