View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_high_19 (Length: 258)
Name: NF4718_high_19
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 22633726 - 22633971
Alignment:
| Q |
1 |
atctttataggttgagttggtaatattacgatataagcagccaatcaagtaggcggcacatgtgaagtactttgttggttgagtgtcgtcaatgttgatt |
100 |
Q |
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| T |
22633726 |
atctttatacgttgagttggtaatattacgatataagcagccaatagagtaggtggcacatgtgaagtactttgttggttgagtgtcgtcaatgttgatt |
22633825 |
T |
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| Q |
101 |
ttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtatcgttagagaaacaaccttcatccagatctgccacac |
200 |
Q |
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| T |
22633826 |
ttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtctcgttagagacacaaccttcatccagatctgccacac |
22633925 |
T |
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| Q |
201 |
ttttatacagtgagtttagacaaccgactgtaacttgccctatgct |
246 |
Q |
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| T |
22633926 |
ttttatacagcgagtttagacaaccgactgtaacttgccctatgct |
22633971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 22625351 - 22625163
Alignment:
| Q |
58 |
acatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttg |
157 |
Q |
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| T |
22625351 |
acatgcgaagtactttgttggttgagtgtcatcaatgttgagtttaagagtgttgcaataatcttcagctgagtttattggctgcagcaacatttgtttg |
22625252 |
T |
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| Q |
158 |
attgtatcgttagagaaacaaccttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgct |
246 |
Q |
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| T |
22625251 |
gttgtcttagttgagaaacaaccttcatccagatttgcaacacttccatagagagagtttagacaaccaactgtaacttgccctatgct |
22625163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 246
Target Start/End: Complemental strand, 23365876 - 23365711
Alignment:
| Q |
81 |
gagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtatcgttagagaaacaacc |
180 |
Q |
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||||||| || ||||| | || ||||||||| ||||||||||| || |||| |||||| || ||||||||||||||||||| || | |||| | |
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| T |
23365876 |
gagtgtcttcgatgttaagttcaagagtgttgcaataatcttctgcaaagttagttggtttaagcagcatttgtttgattgtatgactactcatacaatc |
23365777 |
T |
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| Q |
181 |
ttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgct |
246 |
Q |
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| T |
23365776 |
ttcatcaagatcaaccacacttcgatagagtgagtttagacaaccaacggtaactggccctatgct |
23365711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 22623064 - 22622971
Alignment:
| Q |
69 |
actttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgt |
162 |
Q |
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| T |
22623064 |
actttgttggttgagtgtcatcgatgttaagtttaagagtgttgcaataatcttctgcgaagttaataggttgcagcaacatttgtttggttgt |
22622971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 23335955 - 23336035
Alignment:
| Q |
58 |
acatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattgg |
138 |
Q |
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|||| |||||||||||||||| | | |||||||||||| | ||||||||| |||||||| |||| ||| ||||| |||| |
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| T |
23335955 |
acatatgaagtactttgttggatttgagtcgtcaatgttaagtttaagagttctacaataaccttctgctaagttggttgg |
23336035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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