View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_high_21 (Length: 238)
Name: NF4718_high_21
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_21 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 40935469 - 40935363
Alignment:
| Q |
18 |
aatttaatataaaattaaatactgatgtatttatgaaacaatgttgctgctttattatgcaatattaggcgatatacttattttgattattactttgtat |
117 |
Q |
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| T |
40935469 |
aatttattataaaattaaataatgatgtatttattaaacaatgttgctgctttattatgcaatattaggcgatagacttattttgattattactttgtat |
40935370 |
T |
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| Q |
118 |
taacata |
124 |
Q |
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||||||| |
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| T |
40935369 |
taacata |
40935363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 29378070 - 29378173
Alignment:
| Q |
54 |
aacaatgttgctgctttattatgcaatattaggcgatatacttattttgattattactttgtattaacataacataactgttgttaagcttgttaaaa-a |
152 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
29378070 |
aacaatgttgctgctttattatggaatattaggcgatagacttattttgattattactttgtattaacataat-----tgttgttaagcttgttaaaata |
29378164 |
T |
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| Q |
153 |
acatgattg |
161 |
Q |
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||||||||| |
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| T |
29378165 |
acatgattg |
29378173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 29378167 - 29378215
Alignment:
| Q |
190 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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| T |
29378167 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
29378215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 40935299 - 40935251
Alignment:
| Q |
190 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40935299 |
atgattgtttttaagattatcttaattttggattaatataattgttgtt |
40935251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 40935361 - 40935317
Alignment:
| Q |
194 |
ttgttgttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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| T |
40935361 |
ttgttgttaagattatcttaattttgaattaatataattgttgtt |
40935317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 49822014 - 49821986
Alignment:
| Q |
210 |
cttaattttggattaatataattgttgtt |
238 |
Q |
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| T |
49822014 |
cttaattttggattaatataattgttgtt |
49821986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 5461762 - 5461659
Alignment:
| Q |
54 |
aacaatgttgctgctttattatgcaatattaggcgatatacttattttgattattactttgtattaacataacataactgttgttaagcttgttaaaa-a |
152 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
5461762 |
aacaatgttgctgctttattatggaatattaggcgatagacttattttgattattactttgtattaacataat-----tgttgttaagcttgttaaaata |
5461668 |
T |
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| Q |
153 |
acatgattg |
161 |
Q |
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| T |
5461667 |
acatgattg |
5461659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 5461665 - 5461617
Alignment:
| Q |
190 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5461665 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
5461617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 9797488 - 9797523
Alignment:
| Q |
193 |
attgttgttaagattatcttaattttggattaatat |
228 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
9797488 |
attgttgttaagattatcttaattttggattgatat |
9797523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 11465839 - 11465791
Alignment:
| Q |
190 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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| T |
11465839 |
atgattgttgttaagattatcttaattttggattaatataattgttgtt |
11465791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 11465902 - 11465858
Alignment:
| Q |
193 |
attgttgttaagattatcttaattttggattaatataattgttgt |
237 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11465902 |
attgttgttaagattatcttaattttggattagtataattgttgt |
11465858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 11465932 - 11465894
Alignment:
| Q |
200 |
ttaagattatcttaattttggattaatataattgttgtt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11465932 |
ttaagattatcttaattttggattaatataattgttgtt |
11465894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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