View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_high_22 (Length: 230)
Name: NF4718_high_22
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43474225 - 43474007
Alignment:
| Q |
1 |
ctcccttaaaatagcctttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43474225 |
ctcccttaaaatagcctttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtcgacgtaaaaggtcgag |
43474126 |
T |
|
| Q |
101 |
caaagagtaaagagacaagtatgttatggaacggcgccgaggcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474125 |
caaagagtaaagagacaagtatgctatggaacggcgcagacgcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtct |
43474026 |
T |
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| Q |
201 |
aaggggatgaagttgaaaa |
219 |
Q |
| |
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|||| |||||||||||||| |
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| T |
43474025 |
aaggcgatgaagttgaaaa |
43474007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 43566022 - 43566232
Alignment:
| Q |
1 |
ctcccttaaaatagcctttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgag |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||| | ||||||||||||| || |
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| T |
43566022 |
ctcccttacaatagcctttgagttttgcaatccaaaaatcaaagcatagcagacattcattgtggatagagacgggattctcttgacgtaaaaggtcaag |
43566121 |
T |
|
| Q |
101 |
caaagagtaaagagacaagtatgttatggaacggcgccgaggcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtct |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
43566122 |
caaagagtaaagagacaagtatgctatggaacggcgccgatgctttcgaccagaattccatgcaaatccactattccaaatacgcctatttttgtagtct |
43566221 |
T |
|
| Q |
201 |
aaggggatgaa |
211 |
Q |
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|||| |||||| |
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| T |
43566222 |
aaggcgatgaa |
43566232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 43572864 - 43572996
Alignment:
| Q |
1 |
ctcccttaaaatagcctttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgag |
100 |
Q |
| |
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||||| |||||||||||||||||||| |||| | |||||||| ||| ||||| |||||| | |||||||||||||||||| ||||||||||| ||| |
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| T |
43572864 |
ctcccataaaatagcctttgagttttccaatatagaaatcaaaacgttccagacattcattggggatagagacgggattctgtcgacgtaaaaggctgag |
43572963 |
T |
|
| Q |
101 |
caaagagtaaagagacaagtatgttatggaacg |
133 |
Q |
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|||||||||||||||| |||||| |||||||| |
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| T |
43572964 |
caaagagtaaagagacgagtatgccatggaacg |
43572996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 43562258 - 43562311
Alignment:
| Q |
100 |
gcaaagagtaaagagacaagtatgttatggaacggcgccgaggcttttgactag |
153 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||| |||||||||||| |
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| T |
43562258 |
gcaaagagtaaagagacaagtatgctatggaatggcgtcgatgcttttgactag |
43562311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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