View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4718_high_4 (Length: 432)
Name: NF4718_high_4
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 55454326 - 55454725
Alignment:
| Q |
19 |
ataatggcagcaagagttaaggtctgattaagaaatccttctgagaaggtgcatataatgatacttccaaacactttactaggatcaaaagcttctggat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55454326 |
ataatggcagcaagagttgaggtctgattaagaaatccttctgagaaggtgcatataatgatacttccaaacactttactaggatccaaagcttctggat |
55454425 |
T |
|
| Q |
119 |
gttgacactcttctaagtactctggagtccttggaaatgttccatttattttcactgcatccttagctaatacaagtgtatggtaaaccttcccattccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55454426 |
gttgacactcttctaagtactctggagtccttggaaatgttccatttattttcactgcatccttagctaatacaagtgtatggtaaaccttcccattccc |
55454525 |
T |
|
| Q |
219 |
aaaacttggtcctgtaaaaaagatatgcattattaatcataccaacagtgacatgtagtatttctgttttcttttgcaaaacagaaaagnnnnnnnnnnt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55454526 |
aaaacttggtcctgtaaaaaagatatgcattattaatcataccaacagtgacatgtagtatttctgttttcttttgcaaaacagaaagaaaaaaaaaaat |
55454625 |
T |
|
| Q |
319 |
caaatattttgcatgaataaaataggaagtacctgttagtccaacaccaccaactattgtgccatttctaagaagaattgaagaataataatgtctgtct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55454626 |
caaatattttgcatgaataaaataggaagtacctgttagtccaacaccaccaactattgtgccatttctaagaagaattgaagaataataatgtctgtct |
55454725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University