View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_11 (Length: 313)
Name: NF4718_low_11
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_11 |
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| [»] scaffold1315 (1 HSPs) |
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| [»] scaffold1293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 95 - 293
Target Start/End: Original strand, 43439377 - 43439572
Alignment:
| Q |
95 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctattgccatgtgcaaaatcaggagcttg |
194 |
Q |
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| T |
43439377 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctatcgccatgtgcaaaatcaggagcttg |
43439476 |
T |
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| Q |
195 |
gtaaaatcctatggaatgagctacccttgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacgtgaag |
293 |
Q |
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| T |
43439477 |
g---aatcctatggaatgagctacccctgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacttgaag |
43439572 |
T |
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Target: scaffold1315 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1315
Description:
Target: scaffold1315; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 1072 - 996
Alignment:
| Q |
16 |
gaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
92 |
Q |
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| T |
1072 |
gaagaaaaactaaggagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt |
996 |
T |
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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 42757104 - 42757180
Alignment:
| Q |
16 |
gaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
92 |
Q |
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| T |
42757104 |
gaagaaaaactaagaagagtgtgttttatcattgacaatataattaatagaatgagttgctgataatttatgatttt |
42757180 |
T |
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Target: scaffold1293 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1293
Description:
Target: scaffold1293; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 999 - 1075
Alignment:
| Q |
16 |
gaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
92 |
Q |
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| T |
999 |
gaagaaaaactaagaagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt |
1075 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 6466718 - 6466646
Alignment:
| Q |
16 |
gaagaaaaactaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatga |
88 |
Q |
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| T |
6466718 |
gaagaaaaattaaggagggtgtgttttatatgtgacaatataattaatagaatgagttgcagataatttatga |
6466646 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 25642653 - 25642702
Alignment:
| Q |
137 |
tctctccgtaaattgattctccgcccattctattgccatgtgcaaaatca |
186 |
Q |
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| T |
25642653 |
tctctccgtaaattgattctccgcccattccattgccatgtgtaaaatca |
25642702 |
T |
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