View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_13 (Length: 303)
Name: NF4718_low_13
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 34104645 - 34104835
Alignment:
| Q |
4 |
attctataagagtgttagcttgagttctgttgttattatgtgagaatctcgttggtgagtaacttgttagtacctttctaaccgtttttatgagccacgg |
103 |
Q |
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| T |
34104645 |
attctataagagtgttagcttgagttctgttgttattatgtgagaatctcgttggtgagtaacttgttagtacctttctaaccgtttttatgagccacgg |
34104744 |
T |
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| Q |
104 |
ggttctctccgtactctgctgagtctccataatcaaactcattcaaac-------tttttaagtttaaagtagatgagaactattaaagga |
187 |
Q |
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| T |
34104745 |
ggttctctccgtactctgctgagtctccataatcaaactcattcgaacttttaattttttaagtttaaagtagatgagaactattaaagga |
34104835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 49406840 - 49406741
Alignment:
| Q |
188 |
ggcgaaggctagcgtgggagagcagattaggtcgcgcatggtgcatgagtgtgtttaacagttggattatgatcgtccacggatattatgatgcactata |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49406840 |
ggcgaaggctagcgtgggagagcagattaggtcgcgcatggtgcatgagtgtgtttaacagttggattatgatcgtccacggatattatgatgcactata |
49406741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 6333238 - 6333338
Alignment:
| Q |
187 |
aggcgaaggctagcgtgggagagcagattaggtcgcgcatggtgcatgagtgtgtttaacagttggattatgatcgtccacggatattatgatgcactat |
286 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6333238 |
aggcgaaggctagcgtgggagagcatattaggtcgcgcatggtgcatgagtgtgtttaacagttggattatgatcgtccacggatattatgatgcattat |
6333337 |
T |
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| Q |
287 |
a |
287 |
Q |
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| T |
6333338 |
a |
6333338 |
T |
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