View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_15 (Length: 279)
Name: NF4718_low_15
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 55895717 - 55895991
Alignment:
| Q |
5 |
cagttacattatgaccacaatcgaagctgcgtaataatactctaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatat |
104 |
Q |
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| T |
55895717 |
cagttacattatgaccacaatcgaagctgcgtaataatactctaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatat |
55895816 |
T |
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| Q |
105 |
ttctaatgatcaagcagttatgagtaaaaattcttattttagtgcatatcaattaaatccttaaaacagtaggaacttacatttcttcttctttgacgcg |
204 |
Q |
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| T |
55895817 |
ttctaatgatcaagcagttatgagtaaaaattcttattttagtgcatatcaattaaatccttaaaacagtatgaacttacatttcttcttctttgacgcg |
55895916 |
T |
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| Q |
205 |
aaccaatcccacttgcagcttgggaggtaccagaaacaagatccaagacttccttggagttttggtgagaagatt |
279 |
Q |
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| T |
55895917 |
aaccaatcccacttgcagcttgggaggtaccagaaacaagatccaagacttccttggagttttggtgagaagatt |
55895991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 1029237 - 1028972
Alignment:
| Q |
5 |
cagttacattatgaccacaatcgaagctgcgtaataatactct-aagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaata |
103 |
Q |
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| T |
1029237 |
cagttacattatgaccacaatggaagctgcgtaataatactcttaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaata |
1029138 |
T |
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| Q |
104 |
tttctaatgatcaagcagttatgagtaaaaattcttattttagtgcatatcaattaaatccttaaaacagtaggaacttacatttcttcttctttgacgc |
203 |
Q |
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| T |
1029137 |
tttctaatgatcaagcagttatgagtaaaaattcttattttagtgcatatcaattaaat----------gtatgaacttacatttcttcttctttgacgc |
1029048 |
T |
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| Q |
204 |
gaaccaatcccacttgcagcttgggaggtaccagaaacaagatccaagacttccttggagttttggtgagaagatt |
279 |
Q |
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| T |
1029047 |
gaaccaatcccacttgcagcttgggaggtaccagaaacaagatccaagacttccttagagttttggtgagaagatt |
1028972 |
T |
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