View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4718_low_18 (Length: 264)
Name: NF4718_low_18
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 46998172 - 46998410
Alignment:
| Q |
19 |
ggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacagtgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
46998172 |
ggcacatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgt |
46998271 |
T |
|
| Q |
119 |
aaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46998272 |
aaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccaa |
46998371 |
T |
|
| Q |
219 |
gttctctatgaaatgttgtttgtttagtgatgatgatgt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46998372 |
gttctctatgaaatgttgtttgtttagtgatgatgatgt |
46998410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 46981117 - 46981334
Alignment:
| Q |
40 |
atatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacagtgtaaaaatgagggtcttcagatt |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||| ||||| |||| |
|
|
| T |
46981117 |
atatcatttatggtgatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggatt |
46981216 |
T |
|
| Q |
140 |
ttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccaggttctctatgaaatgttgttt |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46981217 |
ttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaagggagtgtttcagtttctccaccaggttctctatgaaatgttgttg |
46981316 |
T |
|
| Q |
240 |
gtttagtgatgatgatgt |
257 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46981317 |
gtttagtgatgatgatgt |
46981334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 46995927 - 46996114
Alignment:
| Q |
22 |
acatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacagtgtaaa |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46995927 |
acatcaattggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgtaag |
46996026 |
T |
|
| Q |
122 |
aatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagttt |
209 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46996027 |
aatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagttt |
46996114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 46975112 - 46975343
Alignment:
| Q |
22 |
acatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacagtgtaaa |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
46975112 |
acatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgtaag |
46975211 |
T |
|
| Q |
122 |
aatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccaggtt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || ||||||| |||| ||||||||||| ||||| |||||||| ||||| || || ||||| |
|
|
| T |
46975212 |
aatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagtttgtccactaggtt |
46975311 |
T |
|
| Q |
222 |
ctctatgaaatgttgtttgtttagtgatgatg |
253 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||| |
|
|
| T |
46975312 |
ctcaatgaagtgttgttggtttagtgatgatg |
46975343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 47001867 - 47001998
Alignment:
| Q |
22 |
acatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccaagactgtttttgcaatcgacaaaaacagtgtaaa |
121 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47001867 |
acatcaacaggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgtaag |
47001966 |
T |
|
| Q |
122 |
aatgagggtcttcagattttttagtaacaaga |
153 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
|
|
| T |
47001967 |
aatgaggatcttcagatttttgagtaacaaga |
47001998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University