View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_2 (Length: 664)
Name: NF4718_low_2
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Original strand, 34718015 - 34718665
Alignment:
| Q |
1 |
ggaggagtttttagtggtaaaatgataattgtgtcagtc--aaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctcatata |
98 |
Q |
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| T |
34718015 |
ggaggagtttttagtggtaagatgataattgtgtcagtataaaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctcatata |
34718114 |
T |
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| Q |
99 |
aatgagagttaatatataaagtactcaaaaaataaaa-gaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaatcatc |
197 |
Q |
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| T |
34718115 |
aatgagagttaatatataaagtactcaaaaaataaaaagaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaatcatc |
34718214 |
T |
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| Q |
198 |
aactgtcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacattaacc |
297 |
Q |
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| T |
34718215 |
aactgtcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacattaacc |
34718314 |
T |
|
| Q |
298 |
tatttgctagttgcacatatgtactagtgaataatgaatccctcctggacattccctccattattaagaaatagttaagtgatataaatttagattaaaa |
397 |
Q |
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| T |
34718315 |
tatttactagttacacatatgtactagtgaataatgaatccctcctggacattccctccattattaagaaatagttaagtgatataaatttagattaaaa |
34718414 |
T |
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| Q |
398 |
cactcttatttaacccctttcaagtatcaaaaactacactgcatattttcatgtcttttcctcaaatgagggtatcgtcgaaagaaaaaacatcatttag |
497 |
Q |
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| T |
34718415 |
cacccttatttaacccctttcaagtatcaaaaactacactgcatattttcatgtcttttcctcaaatgagggtatcgtcgaaagaaaaaacatcatttag |
34718514 |
T |
|
| Q |
498 |
atacttgatttctaaaatatcaatagttttgaaataattataaaaaacttaacaaccatagttatggaatggggagtcattgcgtctatgtttgagaatt |
597 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34718515 |
atatttgatttctaaaatatcaatagttttgaaataattataaaaaacttaacaacgatagttatggaatggggagtcattgcgtctatgtttgagaatt |
34718614 |
T |
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| Q |
598 |
aatgactcaatcctatttgggtttactttcggctttgagtttgggaagagg |
648 |
Q |
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| T |
34718615 |
aatgtctcattcctatttgggtttactttcggctttgagtttgggaagagg |
34718665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18938656 - 18938589
Alignment:
| Q |
1 |
ggaggagtttttagtggtaaaatgataattgtgtcagtcaaactcagagaagcttaggctagaaattgtgtt |
72 |
Q |
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| T |
18938656 |
ggaggggttttaagtggaaaaatgataattgtgtca----aactcagagaagcttaggctagaaagtgtgtt |
18938589 |
T |
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