View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_21 (Length: 258)
Name: NF4718_low_21
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 18628389 - 18628636
Alignment:
| Q |
1 |
cccaattttactcagctccctcgttcgcttcaccaccacactcaatccggtcgccatcgcggccttataagccgatcccaatccaccgttccccaaaacc |
100 |
Q |
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| T |
18628389 |
cccaattttattcatctccctcattctcttcaccaccacactcaatccggtcgccatcgcggccttataagccgatcccaatccaccgttccccaaaacc |
18628488 |
T |
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| Q |
101 |
tctgccgcagctttcatcaaatcttgtaaaccaaatgaacccttctcatcattcaccatcacaatgtctcctattccatttctactcccaccccccattc |
200 |
Q |
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| T |
18628489 |
tctgccgcagctttcatcaaatcttgtaaaccaaatgaacccttctcatcattcaccatcacaatatcacctattccatttctactcccaccccccattc |
18628588 |
T |
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| Q |
201 |
ctccttttttcgaagattctcccacgttccttctcccaactctctctg |
248 |
Q |
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| T |
18628589 |
ctccttttttcgaagattctcccacgttccttctcccaactctctctg |
18628636 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 51845673 - 51845574
Alignment:
| Q |
65 |
ttataagccgatcccaatccaccgttccccaaaacctctgccgcagctttcatcaaatcttgtaaaccaaatgaacccttctcatcattcaccatcacaa |
164 |
Q |
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|||||||| || || |||||||| || ||||||||||| || ||||||||||||||||| ||| |||||| ||| || |||||||||||||| |||| |
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| T |
51845673 |
ttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcatcaaatcaggtagaccaaacacacctttttcatcattcaccattacaa |
51845574 |
T |
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