View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4718_low_25 (Length: 211)

Name: NF4718_low_25
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4718_low_25
NF4718_low_25
[»] chr6 (1 HSPs)
chr6 (16-107)||(3077829-3077923)
[»] chr2 (2 HSPs)
chr2 (53-156)||(44692722-44692825)
chr2 (56-90)||(15316226-15316260)
[»] chr4 (1 HSPs)
chr4 (17-141)||(34866382-34866509)
[»] chr8 (1 HSPs)
chr8 (52-101)||(14248764-14248813)
[»] chr5 (1 HSPs)
chr5 (47-111)||(5008679-5008743)
[»] chr1 (1 HSPs)
chr1 (47-139)||(47337317-47337409)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 3077923 - 3077829
Alignment:
Q  16 agagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt 107  Q
    |||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3077923 agagaacaattggagtgtagaggagaagagggtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt 3077829  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 44692722 - 44692825
Alignment:
Q  53 caactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttagtaggaggaatg 152  Q
    |||||||||||||| ||||||||||| || |||||||| ||||| ||||  ||||||||||||||||| ||||||||||  |||||| |||| |||||||    
T  44692722 caactttggaaaagcccggctccgtcaaaagtggtggccctttcttggaaagttttgcttgatcgtattccgacgcggtggaatcttcgtagaaggaatg 44692821  T
Q  153 ccct 156  Q
    ||||    
T  44692822 ccct 44692825  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 15316226 - 15316260
Alignment:
Q  56 ctttggaaaagtccggctccgtctaaggtggtggc 90  Q
    ||||||||||||||||||||||||||||| |||||    
T  15316226 ctttggaaaagtccggctccgtctaaggttgtggc 15316260  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 34866509 - 34866382
Alignment:
Q  17 gagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttg 113  Q
    ||||||||||||||||||||||||  |   ||||||  ||||||||||||||| ||||| || || || |||||||| ||||| ||||  || |||||||    
T  34866509 gagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaagtggtggccctttcttggaaagtcttgcttg 34866410  T
Q  114 atcgtatcccgacgcggtttaatcttag 141  Q
    ||||||| ||| |||| || ||||||||    
T  34866409 atcgtattccgtcgcgattgaatcttag 34866382  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 14248813 - 14248764
Alignment:
Q  52 ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga 101  Q
    |||| ||||||| ||||||||||||||||||| |||||| ||||| ||||    
T  14248813 ccaaatttggaagagtccggctccgtctaaggcggtggctctttcttgga 14248764  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 5008743 - 5008679
Alignment:
Q  47 tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgct 111  Q
    ||||| ||||||||||| | ||||||||| |  |||||||||||||| || |||| |||||||||    
T  5008743 tttacgcaactttggaagaatccggctcctttgaaggtggtggcactctcttggaaggttttgct 5008679  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 47337409 - 47337317
Alignment:
Q  47 tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatctt 139  Q
    |||| |||| ||||||| || |||||||| |||||||||||||| || || |||||   ||||||| ||||||| ||||| || || ||||||    
T  47337409 tttagccaagtttggaagagcccggctccttctaaggtggtggcgctctcttggagatctttgcttaatcgtataccgacccgtttgaatctt 47337317  T

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