View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4718_low_6 (Length: 406)
Name: NF4718_low_6
Description: NF4718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4718_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 33 - 390
Target Start/End: Complemental strand, 42528824 - 42528468
Alignment:
| Q |
33 |
tacattaggatctcttaatagttaaacttttccacgtgaaaagcaaccccattttacctacatgatcaaattctacgtacagccccacattttacatggg |
132 |
Q |
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| T |
42528824 |
tacattaggatctcttaatagttaaacttttccacgtgaaaagcaaccccattttacctacatgatcaaattctacgtacagccccacattttacatggg |
42528725 |
T |
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| Q |
133 |
gattgttggtacagaatgatgagtcatctctacgtgttaccacatatgcctagtaactagggacgnnnnnnnnagcactgttccnnnnnnnnnnnnnnnn |
232 |
Q |
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| T |
42528724 |
gattgttggtacagaatgatgagtcatctctacgtgttaccacatatgcctagtaact-gggacgctttttttagcactgttccaaaaaataaataaaaa |
42528626 |
T |
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| Q |
233 |
tgcatgcatgcatattaatcattaagtcaatattcttttcaaaactgttgagaacaatgcagtattagtcaagaagggatcagattaaagggcctagttt |
332 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
42528625 |
tgcatgcatgcttattaatcattaagtcaatattcttttcaaaactgttgagaacaatgcagtagtagtcaagaagggatcaaattaaagggcctagttt |
42528526 |
T |
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| Q |
333 |
agctttgaagttgaagaaatttacctaaccaatccatcccattagttagcatacaaac |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528525 |
agctttgaagttgaagaaatttacctaaccaatccatcccattagttagcatacaaac |
42528468 |
T |
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