View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-2 (Length: 1015)
Name: NF4719-Insertion-2
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 867; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 867; E-Value: 0
Query Start/End: Original strand, 8 - 1015
Target Start/End: Original strand, 30749451 - 30750465
Alignment:
| Q |
8 |
ccttctacctcaatgggtgctccattcccaactataatgtcataagaaataatagttttgttaaggtctttgaaaaggcttcgatcataagtcatgtggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30749451 |
ccttctacctcaatgggtgctccattcccaactataatgttacaagaaataatagttttgttaagctctttgaaaaggcttcgatcataagtcatgtggt |
30749550 |
T |
|
| Q |
108 |
gtgtggcaccactgtcgatataccaaaagtttgagagtattttggttgtaagacctgacattgcaaatagttgttcctttttctcttcctattagagtag |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30749551 |
gtgtggcaccactgtcgatataccaaaagtttgagggtattttggttgtaagacctgacattgcaagtagttgttcctttttctcttcctattagagtag |
30749650 |
T |
|
| Q |
208 |
tttcagttacaaattattaatttgttatgcaactcaaagtaaattcctaagccaagattgttgacatttttctacccaaaacacaccctagatgatgata |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30749651 |
tttcagttacaaattattaatttgttatgcaactcaaagtaaattcctaagccaagattgttgacatttttctacccaaaacacaccctagatgatcata |
30749750 |
T |
|
| Q |
308 |
actttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaactttacactgtgatcgttatctgattccaaaata |
407 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30749751 |
actttgaacgcttgtgagaactctctccaaggtgcaccaaaggtccacaaatctcagagcctccaactttacactgtgatcattatctgattccaaaatg |
30749850 |
T |
|
| Q |
408 |
cagaaaaatgttacatatatagaacatgtatcaaatctactaaaagataatagtgcgacatccaaatagaaaacaaatattaaaatagggtacacaaaat |
507 |
Q |
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|||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30749851 |
cagaaaaaggttacgtatatataacatgtatcaagtctactaaaagataatagtgcgacatccaaatagaaaacatatattaaaatagggtacacaaaat |
30749950 |
T |
|
| Q |
508 |
gtcaacacgcaaaacatagtcgattcaataaatgcgcgcgcacatgcacaaaccgaccccaatgaaccaatacatcaggattttctaccatgtgtaaaca |
607 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30749951 |
gtcaacacacaaaacatagtcgattcaataaatgcgctcgcacacgcacaaaccgaccccaatgaaccaatacatcatgattttctaccatgtgtaaaca |
30750050 |
T |
|
| Q |
608 |
cctttaaaaatcatttgctagcatatcaaatattctacaccaaatattttaattttacacattaacttaattcttttaaaaccaacaaattgtcctaaaa |
707 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750051 |
cctttaaaaatcagttgctagcatatcaaatattctacaccaaattttttaattttacacattaacttaattcttttaaaaccaacaaattgtcctaaaa |
30750150 |
T |
|
| Q |
708 |
attatttttaaaacc----aaatcgatactccaaaattgttttcaaccaatagaacactacaagtattacactaccaacaaaagtgattttcggctatat |
803 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750151 |
attatttttaaaaccaattaaatcgatactccaaaattgttttcaaccaatagaacactacaagtattacactaccaacaaaagtgattttcggctatat |
30750250 |
T |
|
| Q |
804 |
atgtttaacaatgtagaataatactacaaat----gcatgtgatgagagtaaaatttggaatttacaataataaggtcaagatatatgttcaacaagaaa |
899 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
30750251 |
atgtttaacaatgtagaataatactacaaattatggcatgtgatgagagtaaaatttggaatttactattataaggtcaagatatatgttcaacaagaaa |
30750350 |
T |
|
| Q |
900 |
ctgagagcaattaggtaaaatttcttagtattacatatatattctccaaagcacaattt-gaatcctaaccacttctatttccttttcctctttctcaga |
998 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
30750351 |
ctgagagcaattaggtaaaatttcttagtattacatatatattctccaaagcacaatttggaatcctaaccacttctatttcctttt-ctctttctcag- |
30750448 |
T |
|
| Q |
999 |
acgttctttctctcttc |
1015 |
Q |
| |
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||||||||||||||||| |
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| T |
30750449 |
acgttctttctctcttc |
30750465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 30759706 - 30759898
Alignment:
| Q |
8 |
ccttctacctcaatgggtgctccattcccaactataatgtcataagaaataatagttttgttaaggtctttgaaaaggcttcgatcataagtcatgtggt |
107 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||| || |||||||||| ||||||||| || |||||||||| | ||||||||||||||||||||| |
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| T |
30759706 |
ccttctacctcaataggtgctccattcgcaactataaagttataagaaatagcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggt |
30759805 |
T |
|
| Q |
108 |
gtgtggcaccactgtcgatataccaaaagtttgagagtattttggttgtaagacctgacattgcaaatagttgttcctttttctcttcctatt |
200 |
Q |
| |
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| T |
30759806 |
gtgtggcaccactgtcgatatgccaaaagtttgagggtattttggttgtaagacctgacattgcaagtagttgttcctttttatcttcctatt |
30759898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 290 - 508
Target Start/End: Original strand, 30759991 - 30760215
Alignment:
| Q |
290 |
acaccctagatgatgataactttgaacgcttgtgagaactctctc--catggtgcaccaaaggtccacaaatcttagagcctccaactttacactgtgat |
387 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||| || |
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| T |
30759991 |
acaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaggtccacaaatctctgagcctccaactttacattgtcat |
30760090 |
T |
|
| Q |
388 |
cgttatctgattccaaaatacagaaaaatgttacatata--tagaacatgtatcaaatctactaaaagataatagt--gcgacatccaaatagaaaacaa |
483 |
Q |
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| T |
30760091 |
cattatctgattccaaaatgtagaaaaaggttatatatatgtataacatgtatcaagtctactaaaacatatcagtacgtggcatccaaatagccaacaa |
30760190 |
T |
|
| Q |
484 |
atattaaaatagggtacacaaaatg |
508 |
Q |
| |
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|||||||||| ||||| |||||||| |
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| T |
30760191 |
atattaaaatggggtatacaaaatg |
30760215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 30759923 - 30759990
Alignment:
| Q |
198 |
attagagtagtttcagttacaaattattaatttgttatgcaactcaaagtaaattcctaagccaagat |
265 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||| ||||||||| |
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| T |
30759923 |
attagagtagtttcagttacaaatgattaatttgatatgaaactcaaagtaaagtcctgagccaagat |
30759990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 609 - 643
Target Start/End: Original strand, 30760395 - 30760429
Alignment:
| Q |
609 |
ctttaaaaatcatttgctagcatatcaaatattct |
643 |
Q |
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| T |
30760395 |
ctttaaaaatcatttgctaccatatcaaatattct |
30760429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 29823570 - 29823473
Alignment:
| Q |
279 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
375 |
Q |
| |
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||||||||| ||||||||||| || | ||||||||| || |||||||||| |||| ||| || |||||||||||||||| |||| |||||||||||| |
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| T |
29823570 |
ctacccaaagacacaccctagctggtcataactttggacacttgtgagaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
29823473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 2188774 - 2188704
Alignment:
| Q |
305 |
ataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
375 |
Q |
| |
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|||||||||||| |||||||||| |||| ||| || ||| |||||||||||| |||| |||||||||||| |
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| T |
2188774 |
ataactttgaacacttgtgagaaatctcaccaaggcgcatcaaaggtccacatatctcggagcctccaact |
2188704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 19632105 - 19632202
Alignment:
| Q |
279 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
375 |
Q |
| |
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||||||||| ||||| ||||| || | ||||||||| || ||||||| || |||| ||| || |||||||||||||||| |||| |||||||||||| |
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| T |
19632105 |
ctacccaaagacacatcctagctggtcataactttggacacttgtgaaaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
19632202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 20536631 - 20536709
Alignment:
| Q |
279 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccaca |
356 |
Q |
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| T |
20536631 |
ctacccaaagacacaccctagttggtcataactttggacgcttgcgagaactctcgctaaggcgcacccaaggtccaca |
20536709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 19216421 - 19216351
Alignment:
| Q |
305 |
ataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
375 |
Q |
| |
|
||||||||| || |||||||||| |||| ||| || |||||||||||||||| |||| |||||||||||| |
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| T |
19216421 |
ataactttggacacttgtgagaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
19216351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 5187348 - 5187395
Alignment:
| Q |
279 |
ctacccaaaacacaccctagatgatgataactttgaacgcttgtgaga |
326 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||||||| |
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| T |
5187348 |
ctacccaaaacacaccctagctgatcttaactttgaacgcatgtgaga |
5187395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 37626602 - 37626688
Alignment:
| Q |
288 |
acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaac |
374 |
Q |
| |
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||||| ||||| || | ||||||||| || |||||||||| |||| || || |||||||||||||||| |||| ||||||||||| |
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| T |
37626602 |
acacatcctagctggtcataactttggacacttgtgagaaatctcaacaaggcgcaccaaaggtccacatatctcggagcctccaac |
37626688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 41313132 - 41313229
Alignment:
| Q |
279 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
375 |
Q |
| |
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||||||||| ||||| ||||| || | ||||||||| || |||||||||| |||| || || ||| |||||||||||| |||| |||||||||||| |
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| T |
41313132 |
ctacccaaagacacatcctagttggtcataactttggacacttgtgagaaatctcaacaaggcgcatcaaaggtccacatatctcggagcctccaact |
41313229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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