View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-20 (Length: 384)
Name: NF4719-Insertion-20
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 7667932 - 7667556
Alignment:
| Q |
8 |
ggaaagtggctaaatactacaaatcttattttcttatatttaaaagttgcaatatttctgtacaagatgtatttttatggtgtactagggaagatatgtt |
107 |
Q |
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| T |
7667932 |
ggaaagtggctaaatactataaatcttattttcttatatttaaaagttgcaatatttctgtacaagatgtatttttatggtgtacaagggaagatatgtt |
7667833 |
T |
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| Q |
108 |
gtttgttcttctttcacataatctcaatgtcttcactgttatttccacaactgaacttgcgaccataacggcgaactgttggctggaaagttgacttttg |
207 |
Q |
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| T |
7667832 |
gtttgttcttctttcacataatctcaatgtcttcactgttatttccacaactgaacttgcgaccataacggcgaactgttggctggaaagttgacttttg |
7667733 |
T |
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| Q |
208 |
agaccggctaatgttaaactcggtcctgcgatttgtgagtgtctttatcgtcgtggttgatggtttctaagggcttttgtggaagtgtaacttgaactcc |
307 |
Q |
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| T |
7667732 |
agaccggctaatgttaaactcagtcctgcgatttgtgagtgtctttatcgtcgtggttgatggtttctaagggcttttgtggaagtgtaacttgaactcc |
7667633 |
T |
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| Q |
308 |
agggtctctttcattgattgaaccatgaaacatgagtgttaacataagccttcccaatctcaccatgttccattgaa |
384 |
Q |
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| T |
7667632 |
agggtctctttcattgattgaaccatgaaacatgagtgttaacataagccttcccaatctcaccatgttccattgaa |
7667556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 7088177 - 7087850
Alignment:
| Q |
8 |
ggaaagtggctaaatactacaaatcttattttcttatatttaaaagttgcaatatttctgtacaagatgtatttttatggtgtactagggaagatatgtt |
107 |
Q |
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| T |
7088177 |
ggaaagtggctaaatactataaatcttattttcttataattaaaagttgcaatatttctgtacaaggtgtatttttatggtgtacaagggaagctatgtt |
7088078 |
T |
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| Q |
108 |
gtttgttcttctttcacataatctcaatgtcttcactgttatttccacaactgaacttgcgaccataacggcgaactgttggctggaaagttgacttttg |
207 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
7088077 |
---tgttcttatttcacataatctcaatgtcttca------tttccacaactgaacttgcgaccataacggcgaactgttggctggaacgttgacttctg |
7087987 |
T |
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| Q |
208 |
agaccggctaatgttaaactcggtcctgcgatttgtgagtgtctttatcgtcgtggttgatggtttctaagggcttttgtggaagtgtaacttgaactcc |
307 |
Q |
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| T |
7087986 |
agaccggctaatgttaaactcagtcctgcgatta-tgagtgtctttatcatcgtggttgatggtttctaagggcttttgtggaagtgtaacttgaactcc |
7087888 |
T |
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| Q |
308 |
agggtctctttcattgattgaaccatgaaacatgagtg |
345 |
Q |
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| T |
7087887 |
agggtctctttcattgattgaaccatgaaacatgagtg |
7087850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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