View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-21 (Length: 345)
Name: NF4719-Insertion-21
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-21 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 37842869 - 37842536
Alignment:
| Q |
12 |
ataccattgctttagatctttcgtatctgattccattctatggaaacgccttcgaattattattaccagcacaacagaaatcaatatagaggattctatt |
111 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37842869 |
ataccattgctttagatcttccgtatctgattcctttctaaggaaacgcctttgaattattattaccagcacaacagaaatcaatatagaggatccaatt |
37842770 |
T |
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| Q |
112 |
tcaatcatcacaatttgaacattactgatacctttgtgattggttgatttggagacacacgaatttacataactagttttaatgcaacttaaacaactga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
37842769 |
tcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagacacatggatttacataactagttttaatgcaacttaaacaactga |
37842670 |
T |
|
| Q |
212 |
cacatatgataggattacccatgaatgatgatggtgaggaattcaataacttcaatagacctgttggtatagaaccattgaagagattgtaagaaatatt |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
37842669 |
cacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatatt |
37842570 |
T |
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| Q |
312 |
aatctcaattaatgaaacaagacttccaagtgcg |
345 |
Q |
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| T |
37842569 |
gacctcaattaatgaaacaagacttccaagtgcg |
37842536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 37837200 - 37836921
Alignment:
| Q |
62 |
ttcgaattattattaccagcacaacagaaatcaatatagaggattctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
161 |
Q |
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|||||| |||||| |||| |||| ||||||||||||| |||||| | | | | ||||| ||||||||||||| |||||||||||| |||| |||||||| |
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| T |
37837200 |
ttcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgattt |
37837101 |
T |
|
| Q |
162 |
ggagacacacgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataac |
261 |
Q |
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| T |
37837100 |
gtagacacatggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatggtgaggaattcaataac |
37837001 |
T |
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| Q |
262 |
ttcaatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagacttccaag |
341 |
Q |
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||| |||||||||||||| ||| ||||||||||||||| |||||||||| | |||||||||||||||||||| |||||| |
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| T |
37837000 |
ctcattagacctgttggtacagatccattgaagagattgaaagaaatattgacctcaattaatgaaacaagacctccaag |
37836921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 65 - 333
Target Start/End: Complemental strand, 28089685 - 28089418
Alignment:
| Q |
65 |
gaattattattaccagcacaacagaaatcaatatagaggattctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
164 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||| | | ||| |||||||||||||||||||||| |||| |||| |||| |||||||||| | |
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| T |
28089685 |
gaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgta |
28089586 |
T |
|
| Q |
165 |
gacacacgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataacttc |
264 |
Q |
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|||||| | ||||||||||||||||||||||||| || ||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||| || |
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| T |
28089585 |
gacacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatggtgaggaattcaataaactc |
28089487 |
T |
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| Q |
265 |
aatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaaga |
333 |
Q |
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| T |
28089486 |
attagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaattaatgaaacaaga |
28089418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 37831496 - 37831217
Alignment:
| Q |
62 |
ttcgaattattattaccagcacaacagaaatcaatatagaggattctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
161 |
Q |
| |
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||||||| ||||||| || || | ||||||| ||||| |||||| | | ||| |||| ||||||||||||||||| |||||||||||||| ||||| || |
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| T |
37831496 |
ttcgaatcattattagcatcagagcagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgactt |
37831397 |
T |
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| Q |
162 |
ggagacacacgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataac |
261 |
Q |
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| T |
37831396 |
gtagacacatggatttacataactagtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatggtgaggaattcagtaac |
37831297 |
T |
|
| Q |
262 |
ttcaatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagacttccaag |
341 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||| || ||| |||| |||||||||||| |||| |
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| T |
37831296 |
ttcattagacctgttggtacagaaccattgaagagattgtaagaaacattgatatcagttaacgaaacaagactttcaag |
37831217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 37850428 - 37850307
Alignment:
| Q |
213 |
acatatgataggattacccatgaatgatgatggtgaggaattcaataacttcaatagacctgttggtatagaaccattgaagagattgtaagaaatatta |
312 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| |||||||||| |
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| T |
37850428 |
acataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattg |
37850329 |
T |
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| Q |
313 |
atctcaattaatgaaacaagac |
334 |
Q |
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| T |
37850328 |
acctcaattaatgaaacaagac |
37850307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 334
Target Start/End: Complemental strand, 36865944 - 36865675
Alignment:
| Q |
65 |
gaattattattaccagcacaacagaaatcaatatagaggattctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
164 |
Q |
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|||||||||| ||| |||| |||||| ||||| |||| | | | ||| ||||||||||||||||||||| ||||||||||||||| |||| |||| | |
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| T |
36865944 |
gaattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgta |
36865845 |
T |
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| Q |
165 |
gacacacgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataacttc |
264 |
Q |
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| T |
36865844 |
gatacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatgacggtgaggaattcaataaccta |
36865745 |
T |
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| Q |
265 |
aatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagac |
334 |
Q |
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| T |
36865744 |
attagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaattaatgaaacaagac |
36865675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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