View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4719-Insertion-23 (Length: 273)
Name: NF4719-Insertion-23
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-23 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 28376883 - 28377148
Alignment:
| Q |
8 |
gagagaaattaactaagttgttttttccattacaaagttttggtattcaacaaggaaacaattaatactcacatcatcaatcaatggcaaaaggaatgag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28376883 |
gagagaaattaactaagttgttttttccataacaaagttttggtattcaacaaggaaacaattaatactcacatcatcaatcaatggcaaaaggaatgag |
28376982 |
T |
|
| Q |
108 |
gaatctaagttgttggatggaggttgctcctgcacccataattttcccaacaaggccttctaattctcctactttggagacaattaaagaagttgctgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28376983 |
gaatctaagttgttggatggaggttgctcctgcacccataattttcccaacaaggccttctaattctcctactttggagacaattaaagaagttgctgag |
28377082 |
T |
|
| Q |
208 |
gaatatgatgatattcaaattaagcataaataattaatctcgtggagtaacaaatgttgctggaga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28377083 |
gaatatgatgatattcaaattaagcataaataattaatctcgtggagtaacaaatgttgctggaga |
28377148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University