View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4719-Insertion-24 (Length: 228)
Name: NF4719-Insertion-24
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-24 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 31732141 - 31732361
Alignment:
| Q |
8 |
agataaacaaccaggtgagttatagatcaattagtaccttagtaattaacatgagatcatagtttacattaataaatgatctagagttcatcacacaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31732141 |
agataaacaaccaggtgagttttagatcaattagtaccttagtaattaacatgagatcatagtttacattaataaatgatctagagttcatcacacaaaa |
31732240 |
T |
|
| Q |
108 |
tttattagagttcgataacttgccatagattaaattgaatagtatcactaacatcacattatttatacatatatttgtcacgcgaaacgtgctttttaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31732241 |
tttattagagttcgataacttgccatagattaaattgaatagtatcactaacatcacattatttatacatatatttgtcacgcgaaacatgctttttaat |
31732340 |
T |
|
| Q |
208 |
ctattttgtagtccattttga |
228 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31732341 |
ctattttgtagtccattttga |
31732361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 31745042 - 31745262
Alignment:
| Q |
8 |
agataaacaaccaggtgagttatagatcaattagtaccttagtaattaacatgagatcatagtttacattaataaatgatctagagttcatcacacaaaa |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31745042 |
agataaacaaccaggtgagttttagatcaattagtaccttagtaattaacatgagatcatagtttacattaataaatgatctagagttcatcacacaaaa |
31745141 |
T |
|
| Q |
108 |
tttattagagttcgataacttgccatagattaaattgaatagtatcactaacatcacattatttatacatatatttgtcacgcgaaacgtgctttttaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31745142 |
tttattagagttcgataacttgccatagattaaattgaatagtatcactaacatcacattatttatacatatatttgtcacgcgaaacatgctttttaat |
31745241 |
T |
|
| Q |
208 |
ctattttgtagtccattttga |
228 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31745242 |
ctattttgtagtccattttga |
31745262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 31739820 - 31739874
Alignment:
| Q |
51 |
aattaacatgagatcatagtttacattaataaatgatctagagttcatcacacaa |
105 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31739820 |
aattaacttgatatcaaagtttacattaataaatgatctagagttcgtcacacaa |
31739874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University