View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4719-Insertion-4 (Length: 685)
Name: NF4719-Insertion-4
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 685
Target Start/End: Complemental strand, 3621375 - 3620695
Alignment:
| Q |
8 |
tagacctccatcacatggtccaaaaacattgtcatacaatggtatagatatgatattttcaccatacaatgattgttggagagagataagaaaaatttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3621375 |
tagacctccatcacatggtccaaaaacattgtcatataatggtatagatatgatattttcaccatacaatgattgttggagagagataagaaaaatttgt |
3621276 |
T |
|
| Q |
108 |
gttgtccatttctttagctccnnnnnnntttctagctttgctcatgtgagaatatctgaggtcaagctaatgattgaaaagatatctaaccatgtttgtt |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3621275 |
gttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgagaaaatctgaggtcaagctaatgattgaaaagatatctaaccatgtttgtt |
3621176 |
T |
|
| Q |
208 |
cttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3621175 |
cttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
3621076 |
T |
|
| Q |
308 |
gaaaagcaggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
3621075 |
gaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttgataaactc |
3620976 |
T |
|
| Q |
408 |
accggggcaattgctcgtgttgacaacactttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaag |
507 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| |
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|
| T |
3620975 |
acaggggcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaag |
3620876 |
T |
|
| Q |
508 |
atgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcgaagctgtcgttat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |
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|
| T |
3620875 |
atgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttat |
3620776 |
T |
|
| Q |
608 |
ggtatgttctcatgattttcaatat---ttctttttggttatatgccctgttatatagtgttcagaacactcttttcaaga |
685 |
Q |
| |
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||||||||||| ||| ||| ||||| | ||||| ||| ||| |||||||||||| ||||| ||||||||||||||||| |
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|
| T |
3620775 |
ggtatgttctcgtgacttttaatatatatatttttttgttttataccctgttatataatgttccgaacactcttttcaaga |
3620695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Complemental strand, 3631772 - 3631164
Alignment:
| Q |
8 |
tagacctccatcacatggtccaaaaacattgtcatacaatggtatagatatgatattttcaccatacaatgattgttggagagagataagaaaaatttgt |
107 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3631772 |
tagacctccatcatatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgt |
3631673 |
T |
|
| Q |
108 |
gttgtccatttctttagctccnnnnnnntttctagctttgctcatgtgagaatatctgaggtcaagctaatgattgaaaagatatctaaccatgtttgtt |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| || |
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| T |
3631672 |
attgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaagcaaatgattgaaaaaatatctaaccatgttcatt |
3631573 |
T |
|
| Q |
208 |
cttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
307 |
Q |
| |
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| || |||||||||||||||||||| || |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3631572 |
cctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
3631473 |
T |
|
| Q |
308 |
gaaaagcaggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactc |
407 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
3631472 |
gaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactc |
3631373 |
T |
|
| Q |
408 |
accggggcaattgctcgtgttgacaacactttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaag |
507 |
Q |
| |
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|| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| |
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|
| T |
3631372 |
actggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaag |
3631273 |
T |
|
| Q |
508 |
atgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcgaagctgtcgttat |
607 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || | ||| |||| |
|
|
| T |
3631272 |
atgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttat |
3631173 |
T |
|
| Q |
608 |
ggtatgttc |
616 |
Q |
| |
|
||||||||| |
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| T |
3631172 |
ggtatgttc |
3631164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 14313 - 14921
Alignment:
| Q |
8 |
tagacctccatcacatggtccaaaaacattgtcatacaatggtatagatatgatattttcaccatacaatgattgttggagagagataagaaaaatttgt |
107 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14313 |
tagacctccatcatatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgt |
14412 |
T |
|
| Q |
108 |
gttgtccatttctttagctccnnnnnnntttctagctttgctcatgtgagaatatctgaggtcaagctaatgattgaaaagatatctaaccatgtttgtt |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| || |
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|
| T |
14413 |
attgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaagcaaatgattgaaaaaatatctaaccatgttcatt |
14512 |
T |
|
| Q |
208 |
cttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
307 |
Q |
| |
|
| || |||||||||||||||||||| || |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14513 |
cctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtga |
14612 |
T |
|
| Q |
308 |
gaaaagcaggttccatggtttacttaatgagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactc |
407 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
14613 |
gaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactc |
14712 |
T |
|
| Q |
408 |
accggggcaattgctcgtgttgacaacactttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaag |
507 |
Q |
| |
|
|| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
14713 |
actggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaag |
14812 |
T |
|
| Q |
508 |
atgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcgaagctgtcgttat |
607 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || | ||| |||| |
|
|
| T |
14813 |
atgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttat |
14912 |
T |
|
| Q |
608 |
ggtatgttc |
616 |
Q |
| |
|
||||||||| |
|
|
| T |
14913 |
ggtatgttc |
14921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 9027370 - 9027422
Alignment:
| Q |
60 |
atattttcaccatacaatgattgttggagagagataagaaaaatttgtgttgt |
112 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9027370 |
atattttcacaatacactgatttttggagagaaataagaaaaatttgtgttgt |
9027422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 8975619 - 8975682
Alignment:
| Q |
61 |
tattttcaccatacaatgattgttggagagagataagaaaaatttgtgttgtccatttctttag |
124 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| ||||||||||||| |||||| ||||| ||||| |
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|
| T |
8975619 |
tattttctccatacagtgatatttggagagaaataagaaaaatttctgttgtgcatttatttag |
8975682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 9002490 - 9002443
Alignment:
| Q |
63 |
ttttcaccatacaatgattgttggagagagataagaaaaatttgtgtt |
110 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9002490 |
ttttcacaatacactgatttttggagagaaataagaaaaatttgtgtt |
9002443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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