View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-5 (Length: 588)
Name: NF4719-Insertion-5
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 13234890 - 13235318
Alignment:
| Q |
8 |
gttaggttgggctgttctatataggattttattttacattattcttcgttttgcatcaaaaaatcaaaggtcctagtagaggaaaaatgtgtgataaagt |
107 |
Q |
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| T |
13234890 |
gttaggttgggctgttctatataggattttattttacattattcttcgttttgcatcaaaaaatcaaaggtcctagtagaggaaaaatgtgtgataaagt |
13234989 |
T |
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| Q |
108 |
taacaatttaatttgttttgtataatgcaaacatattgtttggatatttgttgcttcaatgtattgtatttgaacaaggtttataaattgagtgatcatt |
207 |
Q |
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| T |
13234990 |
taacaatttaatttcttttgtataatgcaaacatattgtttggatatttgttgcttcaatgtattgtatttgaacaaggtttataaattgagtgatcatt |
13235089 |
T |
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| Q |
208 |
gtattgtacctctcacaataaatcaaatgaagggatagtggtttgaatttgttatccaatgataatgaaaatccaccaataattaataagaataattaaa |
307 |
Q |
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| T |
13235090 |
gtattgtacctctcacaataaatcaaatgaagggatagtggtttgaatttgttatccaatgataatgaaaatttaccaataatttataagaataattaaa |
13235189 |
T |
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| Q |
308 |
caaaaccatatcattcactttcttttattttttaatttatataaaatgatcaaatgcgataattattatggacatacaaagtcttttgaaatagaattca |
407 |
Q |
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| T |
13235190 |
caaaaccatatcattcactttcttttattttttaatttatgtaaaatgatcaaatgcgataattattatggacatacaaaatcttttgaaatagaattca |
13235289 |
T |
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| Q |
408 |
attttcgtctattcaatgactcatattat |
436 |
Q |
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| T |
13235290 |
attttcatctagtcaatgactcatattat |
13235318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 456 - 582
Target Start/End: Original strand, 13235315 - 13235444
Alignment:
| Q |
456 |
ttatcaatttgaaccac---aagcatgttatggaacttgagctatatagatttagttagcatcattaccatttaaaagacgagtttgacaattgacaccc |
552 |
Q |
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| T |
13235315 |
ttatcaatttgaaccacgtcaagcatgttatgtaacttgagctatatagatttagttagcatcattagcatttaaaagacgagtttgacaattgacaccc |
13235414 |
T |
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| Q |
553 |
tcaaatccatagatagagatgactcatatt |
582 |
Q |
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| T |
13235415 |
tcaaatccatagataaagatgactcatatt |
13235444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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