View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4719-Insertion-6 (Length: 568)
Name: NF4719-Insertion-6
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Complemental strand, 29643331 - 29642773
Alignment:
| Q |
7 |
aaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggttgtagacctat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29643331 |
aaaatgagttctaaaactattttttcctttcatgccaccatctaccac-accattccagcaataactcttgatgtgcttgcagttgggtcgtagacctat |
29643233 |
T |
|
| Q |
107 |
aattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacacacggnnnnnnnnntgaatacaatacaaagccc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29643232 |
aattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacacacg-aaaaaaaaatgaatacaatacaaagccc |
29643134 |
T |
|
| Q |
207 |
aaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29643133 |
aaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcagat |
29643034 |
T |
|
| Q |
307 |
gcaattaatataagtttgaggaaataagataattctgatttttccttttctaatcttagtagtgatctgtagataataaaacttttcaagtattatacca |
406 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
29643033 |
gcaattaatataagtttgaagaaataaaataattctgatttttccttttctaatcttagtaatgatctgttgataataaaacttttcaagtcttatacca |
29642934 |
T |
|
| Q |
407 |
aaaacaatctttccaagcctaaatttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctt |
506 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29642933 |
aaaacaatctttccaagcctaattttacttgtcacatcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctt |
29642834 |
T |
|
| Q |
507 |
tggaagaatcatcttccagttaccaaacacttaggagtaggcaataggtaatcatttagca |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29642833 |
tggaagaatcatcttccagttaccaaacacttaggagtagtcaataggtaatcatttagca |
29642773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 199 - 397
Target Start/End: Complemental strand, 29648340 - 29648143
Alignment:
| Q |
199 |
caaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtg |
298 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
29648340 |
caaaacccaaatgtgacaaat-aaaatgtgtgcagaaacatactttcaacaaatttgaactttaatacaatacaaaaacgctcaccatctgcaaattttg |
29648242 |
T |
|
| Q |
299 |
aagcagatgcaattaatataagtttgaggaaataagataattctgatttttccttttctaatcttagtagtgatctgtagataataaaacttttcaagt |
397 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||||||| ||||||||| ||||||||||||| |||| |||| |||||| ||||||||| |||| ||||| |
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|
| T |
29648241 |
aagcaaatgcatttaatataaggttgaagaaataaaataattctggtttttccttttctcatctcagtaatgatctagtgataataaatctttccaagt |
29648143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 199 - 354
Target Start/End: Original strand, 29820530 - 29820684
Alignment:
| Q |
199 |
caaagcccaaatgtgacaaaggaaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtg |
298 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
29820530 |
caaaacccaaatgtgacaaat-aaaatgtgtgcagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttg |
29820628 |
T |
|
| Q |
299 |
aagcagatgcaattaatataagtttgaggaaataagataattctgatttttccttt |
354 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
29820629 |
aagcaaatggaattaatataagtttgaagaaataaagtaactctagtttttccttt |
29820684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 29648555 - 29648398
Alignment:
| Q |
7 |
aaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggttgtagacctat |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
29648555 |
aaaatgagttctaaaactatttcttcctttcatgccaccatctaccacca-----------ataactctcgatgtgcttgcagttgggtcgtagacctat |
29648467 |
T |
|
| Q |
107 |
aattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacaca |
175 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29648466 |
aattcaaaaaggatccgtattatacaagagagtgatacaccgaaatacaaaaggttaaaacaaaacaca |
29648398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 29820315 - 29820472
Alignment:
| Q |
7 |
aaaatgagttctaaaactattttttcctttcatgccaccatctaccaccattaatccagcaataactcttgatgtgcttgcagttgggttgtagacctat |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
29820315 |
aaaatgagttctaaaactatttcttcctttcatgccaccatctaccaccagtaa-----------ctcttgatgtgcttgcatttgggtcgtagacctat |
29820403 |
T |
|
| Q |
107 |
aattcaaaaaggatccgtattatacaggagagtgatgcaccgaaatacaaaaatttaaaacaaaacaca |
175 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
29820404 |
aactcaaaaaggatccgtattatacaagagagtgatacaccgaaatacaaaaggttaaaacaaaacaca |
29820472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 246 - 430
Target Start/End: Original strand, 29596920 - 29597104
Alignment:
| Q |
246 |
aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaggaaataagataattctgat |
345 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||||||||| |||||||| ||||||| || ||||||||||||||||| ||||||| | || |||| |
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|
| T |
29596920 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaaaaactctggc |
29597018 |
T |
|
| Q |
346 |
ttttccttttctaatcttagtagtgatctgtagataataaaacttttcaagtattataccaaaaac-aatctttccaagcctaaat |
430 |
Q |
| |
|
|||||||||||| |||| |||| |||| | ||||||||||| ||||| |||| || || ||||||| ||| |||||||| |||||| |
|
|
| T |
29597019 |
ttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaaatatttccaagtctaaat |
29597104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 29648155 - 29648066
Alignment:
| Q |
412 |
aatctttccaagcctaaatttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaattt |
501 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29648155 |
aatctttccaagtctaaatttacatgtcacttcccattgacatgtttcctgatttaacctttcagtctattactaagagaaattgaattt |
29648066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 512
Target Start/End: Original strand, 29593634 - 29593859
Alignment:
| Q |
288 |
tgcaaattgtgaagcagatgcaattaatataagtttgaggaaataagataattctgatttttccttttctaatcttagt-agtgatctgtagataataaa |
386 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||| ||||||| | || ||| ||||||||||| | |||| ||| | |||||| ||||||||||| |
|
|
| T |
29593634 |
tgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaacaactcttgtttttccttttgtcatctcagtaattgatctatagataataaa |
29593733 |
T |
|
| Q |
387 |
acttttcaagtattataccaaaaac-aatctttccaagcctaaatttacttgtca-cttcgcattgacttgtttcctgctttaacctttcagtctattac |
484 |
Q |
| |
|
||| |||| || |||||||||| || |||||||| |||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||||| | |
|
|
| T |
29593734 |
tatttctaagtcttctaccaaaaacaaagatttccaagtctaaatgtacttgtcattttcccattgacatgtttcctcctttaacctttcagtcta--at |
29593831 |
T |
|
| Q |
485 |
taagagaaatttaatttgcctttggaag |
512 |
Q |
| |
|
||||||||||| |||||| |||||||| |
|
|
| T |
29593832 |
taagagaaattgaatttgattttggaag |
29593859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 29596794 - 29596863
Alignment:
| Q |
66 |
caataactcttgatgtgcttgcagttgggttgtagacctataattcaaaaaggatccgtattatacagga |
135 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| | ||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
29596794 |
caataactcatgatgtgcttgcaattgggttgttggcctataattcaaagaggagccggattatacagga |
29596863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 29820695 - 29820767
Alignment:
| Q |
454 |
tgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctttggaagaatcatcttccagttac |
529 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
29820695 |
tgtttcctactttaacctttcagtctataattaagagaaatttaa---ccttttggaagaatcatcttccagttac |
29820767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 29597213 - 29597254
Alignment:
| Q |
526 |
ttaccaaacacttaggagtaggcaataggtaatcatttagca |
567 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29597213 |
ttaccaaacacttgggagtaggcaataggtaatcatttagca |
29597254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 29593379 - 29593455
Alignment:
| Q |
66 |
caataactcttgatgtgcttgcagttgggt-tgtagacctataattcaaaaaggatccgtattatacaggagagtga |
141 |
Q |
| |
|
||||||||||||||||||||||| || || ||| ||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29593379 |
caataactcttgatgtgcttgcatttaggcctgtctgcctataattcaaaaaggatccatgttatacaggagagtga |
29593455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 29820811 - 29820848
Alignment:
| Q |
530 |
caaacacttaggagtaggcaataggtaatcatttagca |
567 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29820811 |
caaacacttaggagtaggcaatagataatcatttagca |
29820848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 557
Target Start/End: Complemental strand, 29648020 - 29647989
Alignment:
| Q |
526 |
ttaccaaacacttaggagtaggcaataggtaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29648020 |
ttaccaaacacttaggagtaggcaataggtaa |
29647989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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