View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-8 (Length: 491)
Name: NF4719-Insertion-8
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 125 - 491
Target Start/End: Original strand, 30019373 - 30019739
Alignment:
| Q |
125 |
tcattgtttccttcaaaggttgtcatgttctttgcaaagagaaaaacacatccaagcaagtgaa-tgtaattctttaactgaaaagaagtacaatataag |
223 |
Q |
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| T |
30019373 |
tcattgtttccttcaaaggttgtcatgttctttgcaaagagaaaaacacatccaagcaagtgaaatgtaattcttcaactgaaaagaagtacaatataag |
30019472 |
T |
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| Q |
224 |
tgttgaactagtcttatttctgatgaggttaattattgtctgccaaatatgtgagagtttgtattaaattaaatacttttgttgcaagatggaaataaga |
323 |
Q |
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| T |
30019473 |
tgttgaactagtcttatttctgatgaggttaattattgtctgccaaatatgtgagagtttgtattaaattaaatacttttgttgcaagatggaa-taaga |
30019571 |
T |
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| Q |
324 |
tcatttattgtatatatagccctattaatattatagctgttccattgtttcaataatacttcagcttttatcaccaaattaccatttctctagaatgaaa |
423 |
Q |
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| T |
30019572 |
tcatttattgtatatatagccctattaatattatagctgttccattgtttcaataatacttcagcctttatcaccaaattaccatttctctagaatgaaa |
30019671 |
T |
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| Q |
424 |
aaggtatacaagagtctctactttaggacacatgatatttgccaatgcttattagtaatttccaggga |
491 |
Q |
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| T |
30019672 |
aaggcatacaagagtctctactttaggacacatgatatttgccaatgcttattagtaatttccaggga |
30019739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 30019310 - 30019349
Alignment:
| Q |
62 |
gataataataataatgttgaagctggaccagcttcagatg |
101 |
Q |
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| T |
30019310 |
gataataataataatgttgaagctggaccagcttcagatg |
30019349 |
T |
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