View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719-Insertion-9 (Length: 472)
Name: NF4719-Insertion-9
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 472
Target Start/End: Complemental strand, 5936490 - 5936053
Alignment:
| Q |
30 |
tgagatggtaaaaacaaagtacctgttgatcatatgcaggggctgcagaagcagcggcggccgcggcagcaggcctagcggcttttgcagccaccggatt |
129 |
Q |
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| T |
5936490 |
tgagatggtaaaaacaaagtacctgttgatcatatgcaggggctgcagaagcagcggcggccgcggcagcaggcttagcggcttttgcagccaccggatt |
5936391 |
T |
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| Q |
130 |
tgcatggtttgcagtagacacatcattccttcgagcagtgtgggaagattgaggaggcctgtgtgaagtagaaccacccttgtttgagggttgagagtgt |
229 |
Q |
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| T |
5936390 |
tgcatggtttgcagtagacacatcattccttcgagcagtgtgggaagattgaggaggcctgtgtgaagtagaaccacccttgtttgagggttgagagtgt |
5936291 |
T |
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| Q |
230 |
gcagattttttactcacttctcttcctccgcccctgcacatctctctcctctccaaaggattataactgaaacgagaaacacatatatataagccaacca |
329 |
Q |
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| T |
5936290 |
gcagattttttactcacttctcttcctccgcccctgcacatctctctcctctccaaaggattataactgaaacgagaaacacgtatatataagccaatca |
5936191 |
T |
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| Q |
330 |
agccaatcaaccttaattttgagctgatcaaacttaaatcctcaaatccaatataattattacca--------atatcaaaagaatactctgatacattt |
421 |
Q |
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| T |
5936190 |
agccaatcaaccttaattttgaactgatcaaacttaaatcctcaaatccaatataattattaccaatatggcaatatcaaaacaatactctgatacattt |
5936091 |
T |
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| Q |
422 |
aaaacaatcagcaaactcagttttgaactaatcaaacttaaatcctcaaat |
472 |
Q |
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| T |
5936090 |
aaaa-------------cagttttgaactaatcaaacttaaatcctcaaat |
5936053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 472
Target Start/End: Complemental strand, 5936083 - 5935954
Alignment:
| Q |
346 |
ttttgagctgatcaaacttaaatcctcaaatccaatataattattaccaatatcaaaagaatactctgatacatt---taaaacaatcagcaaactcagt |
442 |
Q |
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| T |
5936083 |
ttttgaactaatcaaacttaaatcctcaaatccaatataattaataccaatataaaaacaagactttgacacatttaataaaacattaagcaacctcagt |
5935984 |
T |
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| Q |
443 |
tttgaactaatcaaacttaaatcctcaaat |
472 |
Q |
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| T |
5935983 |
ttagaacttatcaagcttaaatcctcaaat |
5935954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 5935974 - 5935933
Alignment:
| Q |
356 |
atcaaacttaaatcctcaaatccaatataattattaccaata |
397 |
Q |
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| T |
5935974 |
atcaagcttaaatcctcaaatccaatatgatcattaccaata |
5935933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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