View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719_high_4 (Length: 404)
Name: NF4719_high_4
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 43868018 - 43867669
Alignment:
| Q |
21 |
tgtgccatgcttgtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaatt |
120 |
Q |
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| T |
43868018 |
tgtgccatgcttgtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaatt |
43867919 |
T |
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| Q |
121 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaag |
220 |
Q |
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| T |
43867918 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaag |
43867819 |
T |
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| Q |
221 |
gcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaatggttt |
320 |
Q |
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| T |
43867818 |
gcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc------aaaaaaatgattcaattaatggttt |
43867725 |
T |
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| Q |
321 |
gtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac |
376 |
Q |
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| T |
43867724 |
gtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac |
43867669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
121 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
174 |
Q |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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