View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719_high_5 (Length: 390)
Name: NF4719_high_5
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Complemental strand, 48693525 - 48693163
Alignment:
| Q |
12 |
agaagcataggaattaaaaacaggttccttcattttcatgttttagtaaatgattnnnnnnnnttactatataaacattatgaaaacagtcgtgcatcgg |
111 |
Q |
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| T |
48693525 |
agaagcataggaattaaaaacaggttccttcattttcatgttttagtaaatgattaaaaaaaattactatataaacattatgaaaacactcgtgcaacgg |
48693426 |
T |
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| Q |
112 |
acaagtatacacactagcctagttactctagtatattatgtctgaataacaattaactgaaaagatcacaatgaagttaagctaaccttatgaaagatag |
211 |
Q |
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| T |
48693425 |
acaagtatacacactagtctagttactctagtatattatgtctgaataacaattaactgaaaagatcacaatgaagttaagctaaccttatgaaagatag |
48693326 |
T |
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| Q |
212 |
tggagtcaaatgcattaagcagttaaaaaattattgagaaacactacttggactttttagcaggttcagttttcttttgtctgaatgaaatgaaaaacct |
311 |
Q |
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| T |
48693325 |
tggagtcaaatgcattaagcagttaaaaaattattgagaaacattacttggactttttagcaggttcagttttcttttgtctgaatgaaatgaaaaacct |
48693226 |
T |
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| Q |
312 |
caggtgttgttgaataaacaataatacaaacaagccaaattatttatatccgatgatgtttgt |
374 |
Q |
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| T |
48693225 |
caggtgttgttgaataaacaataatacaaacaagccaaattatttatatccgatgatgtttgt |
48693163 |
T |
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