View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719_high_6 (Length: 378)
Name: NF4719_high_6
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 54791470 - 54791822
Alignment:
| Q |
11 |
caaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791470 |
caaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaagg |
54791569 |
T |
|
| Q |
111 |
aaggctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaac |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791570 |
aaggctgagaacagtttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaac |
54791669 |
T |
|
| Q |
211 |
ctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791670 |
ctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgt |
54791769 |
T |
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| Q |
311 |
ataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgct |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791770 |
ataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgct |
54791822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 52284128 - 52284480
Alignment:
| Q |
11 |
caaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284128 |
caaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaagg |
52284227 |
T |
|
| Q |
111 |
aaggctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaac |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
52284228 |
aaggctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggctaatgaaattgatattacaaatgaaaac |
52284327 |
T |
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| Q |
211 |
ctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgt |
310 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284328 |
ctcaacaaaatgcaatataagtataacgagaagaccatgtctttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgt |
52284427 |
T |
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| Q |
311 |
ataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgct |
363 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
52284428 |
ataatttctgttagaatctgattttgtcttattgtatgtaaaggccgtgtgct |
52284480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 54777672 - 54777324
Alignment:
| Q |
15 |
ggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaagg |
114 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54777672 |
ggacatgctggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaacaaaggaagg |
54777573 |
T |
|
| Q |
115 |
ctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctca |
214 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
54777572 |
ctgagaacaatttcggatattgttcaagaagcatctgaaagagaaaatagcaaacgggaaaacctgaccaatgaaattgacattccaaatgaaaacctca |
54777473 |
T |
|
| Q |
215 |
acaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataa |
314 |
Q |
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||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54777472 |
acataattcggtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaatgacaggcttcacaatgcttttgttgaaggtttgtataa |
54777373 |
T |
|
| Q |
315 |
tgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgct |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777372 |
tgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgct |
54777324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 799402 - 799734
Alignment:
| Q |
15 |
ggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaagg |
114 |
Q |
| |
|
|||| |||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| |
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| T |
799402 |
ggacttgcaggacagttcagagatttacggttgggttgcacgtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaagg |
799501 |
T |
|
| Q |
115 |
ctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctca |
214 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||| |
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| T |
799502 |
ctgaggacaatttcagatatagttcaagaagcatctcaaagcagaaatagcattgtggaaaacctggcaaatgagattgatattactaatgaaaatctca |
799601 |
T |
|
| Q |
215 |
acaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataa |
314 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
799602 |
acaagatgcagtataggtataatgagaagactatgtccttgagtaggatgctggaggagaaagacaaacttcacagtgcttttgttgaaggtttgtataa |
799701 |
T |
|
| Q |
315 |
tgtctgttagaatctgattttgccttattgtat |
347 |
Q |
| |
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| ||||||| ||||||||||||||||||||||| |
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| T |
799702 |
tttctgttataatctgattttgccttattgtat |
799734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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