View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4719_low_1 (Length: 446)
Name: NF4719_low_1
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 14622290 - 14621858
Alignment:
| Q |
1 |
ttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14622290 |
ttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagctgcggctacgctgtaatacgcacaaggaatgtt |
14622191 |
T |
|
| Q |
101 |
gaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622190 |
gaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaa |
14622091 |
T |
|
| Q |
201 |
ccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622090 |
ccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgatttta |
14621991 |
T |
|
| Q |
301 |
ccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14621990 |
ccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaacgtgacagtgtgaccattttgagcaag |
14621891 |
T |
|
| Q |
401 |
aattttggctaactcgaaaaaaggtagtatgtg |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14621890 |
aattttggctaactcgaaaaaaggtagtatgtg |
14621858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 14588632 - 14588200
Alignment:
| Q |
1 |
ttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
14588632 |
ttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagctgcgcctatgctgtaatacgcacaaggaatgtt |
14588533 |
T |
|
| Q |
101 |
gaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14588532 |
gaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaagttttgaatatctcagtaacacggtcttggaaa |
14588433 |
T |
|
| Q |
201 |
ccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588432 |
ccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgatttta |
14588333 |
T |
|
| Q |
301 |
ccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14588332 |
ccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaag |
14588233 |
T |
|
| Q |
401 |
aattttggctaactcgaaaaaaggtagtatgtg |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14588232 |
aattttggctaactcgaaaaaaggtagtatgtg |
14588200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 12846083 - 12845949
Alignment:
| Q |
87 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
186 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||||||||| || | | | |||| |||||||||| ||||| || || |||||||||||||| |||| |
|
|
| T |
12846083 |
gcacaagggatgttcaaacttttggctattgacggtaaccattcggtagcaaaatcatagaaaacccagtcagggtttgatgttttgagtatctcagtaa |
12845984 |
T |
|
| Q |
187 |
cacggtcttggaaaccatcataagctaacttaagg |
221 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
12845983 |
catcatcttggagaccatcataagccaacttaagg |
12845949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 424
Target Start/End: Complemental strand, 12845867 - 12845743
Alignment:
| Q |
300 |
accaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaa |
399 |
Q |
| |
|
||||| || |||||||||||||| |||| || ||||| ||||| || ||||| ||||||||| ||||||||| || ||| ||||| |||||||||| |
|
|
| T |
12845867 |
accaattttatgaatggttgaagaattttaggggtttttggcatgtggtcaatatttttagggctgtttatgaaggtaacatagtgacccttttgagcaa |
12845768 |
T |
|
| Q |
400 |
gaattttggctaactcgaaaaaagg |
424 |
Q |
| |
|
|||| ||||| ||||| ||| |||| |
|
|
| T |
12845767 |
gaatcttggccaactcaaaataagg |
12845743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 11530174 - 11529766
Alignment:
| Q |
1 |
ttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgtt |
100 |
Q |
| |
|
||||||| |||||| |||||||| | || | ||| |||||||||||||||||| | ||||||||||| | | |||||||| ||||||||||| || |
|
|
| T |
11530174 |
ttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctggaacaatgctgtaatgggcacaaggaatatt |
11530075 |
T |
|
| Q |
101 |
gaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaa |
200 |
Q |
| |
|
| || ||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||| || |||||||||||||| |||||| | |||||| | |
|
|
| T |
11530074 |
caggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttttgagtatctcagtaacatcgacttggaga |
11529975 |
T |
|
| Q |
201 |
ccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgatttta |
300 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||| |||||||| ||||| ||| |||||| |
|
|
| T |
11529974 |
ccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttctagttgttctatgtggggtaagggtaatttta |
11529875 |
T |
|
| Q |
301 |
ccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaag |
400 |
Q |
| |
|
|||| ||||||||||| |||| || ||| ||||||||||| |||||||||||||||||||| ||| |||| || ||||||||||||| ||||||||||| |
|
|
| T |
11529874 |
ccaaattgatgaatggctgaattgcttttggtgttttgggaatttgatcaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaag |
11529775 |
T |
|
| Q |
401 |
aattttggc |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
11529774 |
aattttggc |
11529766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 140 - 424
Target Start/End: Complemental strand, 20492205 - 20491921
Alignment:
| Q |
140 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaac |
239 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||||| |||||||||||||| || ||||||| |||| | || ||| |
|
|
| T |
20492205 |
atcatagaaaacccaatcaggctttgaagttttaagtatttcagtaacatggtcttgaaaaccatcataagccaatttaaggtgaccattcttgtctaat |
20492106 |
T |
|
| Q |
240 |
ggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgg |
339 |
Q |
| |
|
||||| || ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||| |
|
|
| T |
20492105 |
ggaaccttaagagtgctctcttcaccatgtagttgttctatgtatggtaaaggtgattttaccaaattgatgaatggttgaattgctttgggtgctttgg |
20492006 |
T |
|
| Q |
340 |
gcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaagaattttggctaactcgaaaaaagg |
424 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
20492005 |
gcatttgatcaatgtttttgggggagtttatgaaggtgacagtgtgacccttttgagcaagaatttttgctaactcgaaataagg |
20491921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 411
Target Start/End: Complemental strand, 1354383 - 1354248
Alignment:
| Q |
276 |
tctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatg |
375 |
Q |
| |
|
||||||| ||||||||| || ||||||| ||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
1354383 |
tctatgtgtggtaaaggcaatcttaccaatttgatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaagg |
1354284 |
T |
|
| Q |
376 |
tgacagtgtgactattttgagcaagaattttggcta |
411 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
1354283 |
tgacagtgtgaccctttgaagctagaattttggcta |
1354248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 276 - 411
Target Start/End: Complemental strand, 1361269 - 1361134
Alignment:
| Q |
276 |
tctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatg |
375 |
Q |
| |
|
||||||| ||||||||| || ||||||| || |||||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
1361269 |
tctatgtgtggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaagg |
1361170 |
T |
|
| Q |
376 |
tgacagtgtgactattttgagcaagaattttggcta |
411 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
1361169 |
tgacagtgtgaccctttgaagctagaattttggcta |
1361134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 1357291 - 1357250
Alignment:
| Q |
140 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctc |
181 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
1357291 |
atcatagaaaacccaatcaggatttgaagttttgagtatctc |
1357250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 87 - 424
Target Start/End: Complemental strand, 29954123 - 29953786
Alignment:
| Q |
87 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
186 |
Q |
| |
|
|||||||||||||||| || || ||||| |||||||||||||| | | | |||| | ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29954123 |
gcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttttgagtatctcagtaa |
29954024 |
T |
|
| Q |
187 |
cacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatgg |
286 |
Q |
| |
|
|| |||||||| ||| |||||||| || ||||| |||||| | ||| || ||||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
29954023 |
catcgtcttggagaccgtcataagccaatttaagataaccaagcatgttaaatggaacattttgagtgctctctccaccttgtagttgttctatgtatgg |
29953924 |
T |
|
| Q |
287 |
taaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtga |
386 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||||| || || ||| |||| ||||||||||||||| |
|
|
| T |
29953923 |
taaaggtgattttaccaaattgatgaatggttgaattgttttgggtggtttcggaatttgatcaatgattccgggagagcttataaatgtgacagtgtga |
29953824 |
T |
|
| Q |
387 |
ctattttgagcaagaattttggctaactcgaaaaaagg |
424 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
29953823 |
cgattttgagcaagaatcttggccaactcgaaataagg |
29953786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 33 - 429
Target Start/End: Original strand, 51370276 - 51370672
Alignment:
| Q |
33 |
tcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccg |
132 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||||| || ||||||| |||||||||||||| | || ||||| || | ||| |||||||| | |
|
|
| T |
51370276 |
tccctaggtggattaaagaaacatacgttcaaagctgcgagtatactgtaatgagcacaaggaatgttaaggcttttggcaattgccggcaaccaatcag |
51370375 |
T |
|
| Q |
133 |
atactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttag |
232 |
Q |
| |
|
| | |||| ||||||||||||||||||| |||||||||||||| || |||||| |||||| | ||| |||||||| |||||||| |||||| | | |
|
|
| T |
51370376 |
ctgcacaatcatagaaaacccaatcaggctttgaagttttgagtatatcagtaacattgtcttgtagaccgtcataagccaacttaagataaccaatcat |
51370475 |
T |
|
| Q |
233 |
gtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggt |
332 |
Q |
| |
|
|||| |||| ||| || |||| ||| |||||||||||| |||||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
51370476 |
gttttttggaatattctgcatgctctcttcaccttgtagttgttctatatgtggtaaaggtgatttaaccaaattgatgaatggttgaattgttttgggt |
51370575 |
T |
|
| Q |
333 |
gttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgactattttgagcaagaattttggctaactcgaaaaaaggtagta |
429 |
Q |
| |
|
| ||| || ||||||||||||||||| || ||||| || || ||||||||||||| ||||||||||||||||||||| ||||| ||| |||| |||| |
|
|
| T |
51370576 |
ggtttaggaatttgatcaatgtttttgggagagttgataaaggtgacagtgtgaccattttgagcaagaattttggccaactcaaaataagggagta |
51370672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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