View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719_low_11 (Length: 299)
Name: NF4719_low_11
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 21703615 - 21703896
Alignment:
| Q |
1 |
ctacgtgacgattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaactcttgtaactgaagttggtaagaaggctgaggaatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21703615 |
ctacgtgacgattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaactcttgcaactgaagttggtaagaaggctgaggaatcaa |
21703714 |
T |
|
| Q |
101 |
atatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21703715 |
atatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttagaaaaattcaaggaaaaatggcagctttgttaaacttgaaactcagtga |
21703814 |
T |
|
| Q |
201 |
agaagaggaagacgaaagagcacaacggttgtggttgagtctgaaag-nnnnnnnncgaattcttgtcatagtagacgattt |
281 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21703815 |
agaagatgaagacgaaagagcacaacgtttgtggttgagtctgaaagaaaaaaaaacgaattcttgtcatagtagacgattt |
21703896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 21715891 - 21715654
Alignment:
| Q |
10 |
gattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaactcttgtaactgaagttggtaagaaggctgaggaatcaaatatgttcg |
109 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
21715891 |
gattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacacttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcg |
21715792 |
T |
|
| Q |
110 |
ataaggttatcttaatcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaactcagtgaagaagagga |
209 |
Q |
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| T |
21715791 |
ataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcga |
21715692 |
T |
|
| Q |
210 |
agacgaaagagcacaacggttgtggttgagtctgaaag |
247 |
Q |
| |
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||| | ||||||||||||||||||||||||| |||||| |
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| T |
21715691 |
agagggaagagcacaacggttgtggttgagtttgaaag |
21715654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 21115072 - 21115208
Alignment:
| Q |
10 |
gattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaactcttgtaactgaagttggtaagaaggctgaggaatcaaatatgttcg |
109 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| || |||||||| |||| | | |||||||| |||||||||||||||| | ||||||| | |
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| T |
21115072 |
gattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaacccttgcagcagaagttggcaagaaggctgaggaattagatatgtttg |
21115171 |
T |
|
| Q |
110 |
ataaggttatcttaatcacagtgtctcaaactccaaa |
146 |
Q |
| |
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|||||||||| | |||||| || ||||||||||||| |
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| T |
21115172 |
ataaggttatatcaatcactgtcgctcaaactccaaa |
21115208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 281
Target Start/End: Original strand, 21643966 - 21644169
Alignment:
| Q |
78 |
tggtaagaaggctgaggaatcaaatatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagct |
177 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||| || | ||||||| ||||||||||| ||| || || | ||||| | ||||||||||| |
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| T |
21643966 |
tggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagac |
21644065 |
T |
|
| Q |
178 |
ttgttaaacttgaaactcagtgaagaagaggaagacgaaagagcacaacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacg |
277 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||| ||| || ||||||||||| |||||||| | |
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| T |
21644066 |
atgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagtagatg |
21644165 |
T |
|
| Q |
278 |
attt |
281 |
Q |
| |
|
|||| |
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|
| T |
21644166 |
attt |
21644169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 21122521 - 21122681
Alignment:
| Q |
32 |
tgtatggaatgggtggatgtgggaaaacaactcttgtaactgaagttggtaagaaggctgaggaatcaaatatgttcgataaggttatcttaatcacagt |
131 |
Q |
| |
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|||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||| ||||||| ||||||||||| | |||||| || |
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| T |
21122521 |
tgtacggaatgggtggatgtggaaaaacaacccttgtaacggaagttggcaagaaggctgaggaattggatatgtttgataaggttatatcaatcaccgt |
21122620 |
T |
|
| Q |
132 |
gtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagctttgttaaacttgaaa |
192 |
Q |
| |
|
| | |||||||||| || | | ||||||| | |||| |||| | |||||||||||||| |
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|
| T |
21122621 |
gacaagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaa |
21122681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 281
Target Start/End: Original strand, 21622252 - 21622455
Alignment:
| Q |
78 |
tggtaagaaggctgaggaatcaaatatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttggaaaaattcaagaaaaaatggcagct |
177 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||| || | ||||||| ||||||||||| ||| || || | ||||| | |||||||| || |
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| T |
21622252 |
tggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagatattcatggaaaaatggtagac |
21622351 |
T |
|
| Q |
178 |
ttgttaaacttgaaactcagtgaagaagaggaagacgaaagagcacaacggttgtggttgagtctgaaagnnnnnnnncgaattcttgtcatagtagacg |
277 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| | ||||||||||||||| ||||||||| ||| || ||||||||||| |||||||| | |
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| T |
21622352 |
atgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttatggttgagtttgacagaaaataaacgaattcttgttatagtagatg |
21622451 |
T |
|
| Q |
278 |
attt |
281 |
Q |
| |
|
|||| |
|
|
| T |
21622452 |
attt |
21622455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 21622221 - 21622254
Alignment:
| Q |
20 |
atatgataggagtgtatggaatgggtggatgtgg |
53 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
21622221 |
atatgataggtgtgtatggaatgggtggatgtgg |
21622254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 21643935 - 21643968
Alignment:
| Q |
20 |
atatgataggagtgtatggaatgggtggatgtgg |
53 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
21643935 |
atatgataggtgtgtatggaatgggtggatgtgg |
21643968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 23010781 - 23010660
Alignment:
| Q |
22 |
atgataggagtgtatggaatgggtggatgtgggaaaacaactcttgtaactgaagttggtaagaaggctgaggaatcaaatatgttcgataaggttatct |
121 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||| ||| | ||||||| | || || ||| ||| | |
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|
| T |
23010781 |
atgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatat |
23010682 |
T |
|
| Q |
122 |
taatcacagtgtctcaaactcc |
143 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
23010681 |
taattacagtgtctcaaactcc |
23010660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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