View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4719_low_2 (Length: 432)

Name: NF4719_low_2
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4719_low_2
NF4719_low_2
[»] chr4 (2 HSPs)
chr4 (19-417)||(44474456-44474854)
chr4 (146-416)||(44474319-44474589)
[»] chr8 (34 HSPs)
chr8 (21-418)||(38453488-38453885)
chr8 (68-371)||(39848636-39848939)
chr8 (79-367)||(38632929-38633216)
chr8 (146-371)||(38632648-38632871)
chr8 (152-310)||(34544781-34544939)
chr8 (146-363)||(34533725-34533942)
chr8 (146-348)||(34533863-34534065)
chr8 (151-375)||(38632780-38633007)
chr8 (146-353)||(39848375-39848582)
chr8 (151-277)||(38453894-38454020)
chr8 (146-375)||(34533587-34533816)
chr8 (153-338)||(34916295-34916480)
chr8 (141-348)||(39848518-39848728)
chr8 (151-296)||(34539031-34539176)
chr8 (146-418)||(38453751-38454023)
chr8 (146-348)||(34916426-34916628)
chr8 (285-371)||(34539027-34539113)
chr8 (241-412)||(34544732-34544903)
chr8 (153-338)||(34916157-34916342)
chr8 (137-225)||(34549174-34549262)
chr8 (146-230)||(38632548-38632632)
chr8 (161-285)||(36951413-36951537)
chr8 (153-277)||(39848214-39848338)
chr8 (263-348)||(34533566-34533651)
chr8 (241-338)||(34916107-34916204)
chr8 (282-363)||(34549181-34549262)
chr8 (153-238)||(34916571-34916656)
chr8 (279-415)||(39848730-39848866)
chr8 (157-232)||(34548525-34548600)
chr8 (283-368)||(38632548-38632633)
chr8 (146-222)||(39848368-39848444)
chr8 (299-353)||(36951483-36951537)
chr8 (268-368)||(39848261-39848361)
chr8 (298-338)||(34548528-34548568)
[»] chr3 (2 HSPs)
chr3 (78-418)||(7045754-7046084)
chr3 (169-416)||(7045973-7046220)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 44474854 - 44474456
Alignment:
Q  19 tccatatcgtcagtcctttctctatcactttttcatttgagcatatgcaacccttgtagattgttctatttgagcatgtgtatgatccgttgtcatggag 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||||||| |||||||||||  ||    
T  44474854 tccatatcatcagtcctttctctatcactttttcatttgagcatatgcaacccttgtacattgtttcatttgaacatgtgtatgttccgttgtcataaag 44474755  T
Q  119 aagtttacccctgaagttaccaatgtcgacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaaca 218  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44474754 aagtttactcctgaagttaccaatgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaaca 44474655  T
Q  219 tcaccattagcccaactcatggtccctcctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatc 318  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44474654 tcaccattagtccaactcatggtccctcttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaactccaaatc 44474555  T
Q  319 catgtctaagtccatttgacagacaaccattaaaatgatcaccattagcccaactcaaattccctcctccatccaatttacctgttttccaatttccag 417  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  44474554 catgtctaagcccatttgacagacaaccattaaaatgatcatcattagcccaattcaaattccctcttccatccaatttccctgttttccaatttccag 44474456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 416
Target Start/End: Complemental strand, 44474589 - 44474319
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| |||||||| ||||| || |||||||| |||||||| |||| |||||||||   ||||| | ||||  |||| ||||||||||| |||   |||||    
T  44474589 gacatccccatttacaaatgtataaactccaaatccatgtctaagcccatttgacagacaaccattaaaatgatcatcattagcccaattcaaattccct 44474490  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
    | |||||||| |||  || |||||||||||||    ||||||||||||| || | || || |||||||||||||||||  ||| |||||||||  | |||    
T  44474489 cttccatccaatttccctgttttccaatttccagcgtagacatccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaac 44474390  T
Q  346 cattaaaatgatcaccattagcccaactcaaattccctcctccatccaatttacctgttttccaatttcca 416  Q
    || |||||  ||| ||| |||||||| | ||| |||||| ||||||   | || || ||||||||||||||    
T  44474389 caataaaaacatcgccaatagcccaagtgaaaatccctcttccatctggtgtatcttttttccaatttcca 44474319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 418
Target Start/End: Original strand, 38453488 - 38453885
Alignment:
Q  21 catatcgtcagtcctttctctatcactttttcatttgagcatatgcaacccttgtagattgttctatttgagcatgtgtatgatccgttgtcatggagaa 120  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||  ||||||||  ||||||| |||| ||      
T  38453488 catatcatcagtcttttctctatcacttttccatttgagcatatgcaaccctcgtacattgttccatttgaaaatgtgtattttccgttgccatgaagtt 38453587  T
Q  121 gtttacccctgaagttaccaatgtcgacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatc 220  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  38453588 gtttactcctgaagttaccaatgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatc 38453687  T
Q  221 accattagcccaactcatggtccctcctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatcca 320  Q
    ||||||||||||||||||| |||||  ||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  38453688 accattagcccaactcatgatccctgttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtcca 38453787  T
Q  321 tgtctaagtccatttgacagacaaccattaaaatgatcaccattagcccaactcaaattccctcctccatccaatttacctgttttccaatttccagt 418  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |||| |||| ||||| |||||| |||||||||| | |||| |||||||||||||||    
T  38453788 tgtctaagtccatgcgacagacaaccatcaaattgatcaccgttagtccaattcaaaatccctcttccatccaatctccctgctttccaatttccagt 38453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 68 - 371
Target Start/End: Complemental strand, 39848939 - 39848636
Alignment:
Q  68 acccttgtagattgttctatttgagcatgtgtatgatccgttgtcatggagaagtttacccctgaagttaccaatgtcgacacccccatttgcaaatcta 167  Q
    ||||| ||| ||||||| |||||||  |||||||  ||| ||||||||||||||||||| ||||||||||||||| |||||| |||| || ||| |||||    
T  39848939 accctcgtatattgttccatttgagtgtgtgtattttccattgtcatggagaagtttactcctgaagttaccaatatcgacatccccgttagcatatcta 39848840  T
Q  168 aaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccatccattttgtcttttt 267  Q
     |||||||| ||||||||||||||||||||||||| ||||| || || |||||||||  | ||||||||||  |||||  ||||||||||||||||||||    
T  39848839 taaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccctgttccatccattttgtcttttt 39848740  T
Q  268 tccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagc 367  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||    
T  39848739 tccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagc 39848640  T
Q  368 ccaa 371  Q
    ||||    
T  39848639 ccaa 39848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 79 - 367
Target Start/End: Complemental strand, 38633216 - 38632929
Alignment:
Q  79 ttgttctatttgagcatgtgtatgatccgttgtcatggagaagtttacccctgaagttaccaatgtcgacacccccatttgcaaatctaaaaactccaga 178  Q
    |||||| || |||||||||||||  ||| ||| ||||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||||| ||||||||||    
T  38633216 ttgttccatctgagcatgtgtattttccattgacatggagaagtttactcctgaagttaccaatatcgacatccccattagcatatctataaactccaga 38633117  T
Q  179 tccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccatccattttgtcttttttccaatttccg 278  Q
    |||||||||||| ||||||||||| ||||| || || ||||||||| |||||||| ||||  |||||  |||||||||||||||| |||||||||||||     
T  38633116 tccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaagtcataatccctattccatccattttgtct-ttttccaatttcct 38633018  T
Q  279 atatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagc 367  Q
    |  || |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | |||||| ||||  |||||| |||||    
T  38633017 acgtaaacatccccatttgcaaatttataaactccaaatccatatctaagtccatttgacaaataaccatcaaaaacatcaccgttagc 38632929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 146 - 371
Target Start/End: Complemental strand, 38632871 - 38632648
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||||||| ||||| |||||||| |||||||||||||||||| |||||| ||||| || || ||||||||| |||||||||||||  | |||    
T  38632871 gacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcaccagtagcccaactcataattcct 38632772  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
      ||||||||||  |||||||||||||||||| || ||||||| ||||| | || ||||||||||||||||||||||||||| ||||||||| |||||||    
T  38632771 tttccatccatt--gtcttttttccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgtctaaatccatttgatagacaac 38632674  T
Q  346 cattaaaatgatcaccattagcccaa 371  Q
    ||| ||||  |||||||| |||||||    
T  38632673 catcaaaagcatcaccatcagcccaa 38632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 34544781 - 34544939
Alignment:
Q  152 cccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctcca 251  Q
    |||||||| ||||||| |||||||| |||||||| || ||||||||||||| || || |  ||||||||||||||| ||||| ||||  |||||| ||||    
T  34544781 cccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatccctcttcca 34544880  T
Q  252 tccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaac 310  Q
    |||||||| || ||||||||||| || || ||||||||||||||| |||||||||||||    
T  34544881 tccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 146 - 363
Target Start/End: Original strand, 34533725 - 34533942
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||||| || |||||| ||||||||||||| |||||  |||||    
T  34533725 gacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacaccattagcccatctcataatccct 34533824  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
      ||||||  ||    |||||||||||| |||  | | ||||||||||||| || |||||||||||||| |||||| | |||||| |||||||  |||||    
T  34533825 tttccatcatttcccccttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaac 34533924  T
Q  346 cattaaaatgatcaccat 363  Q
    ||| ||||  ||||||||    
T  34533925 catcaaaaacatcaccat 34533942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 146 - 348
Target Start/End: Original strand, 34533863 - 34534065
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||||||| ||||| |||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||  |||||    
T  34533863 gacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcaccatcaacccaattcataatccct 34533962  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
       ||||| |||||  | |||| |||||||||  |||| ||||| ||||||||| |||||||||| |||  ||||||| ||||||||||||||  |||||    
T  34533963 ttcccatctattttcccattttcccaatttcctctataaacatctccatttacatatctataaaccccatgtccatgtttaagtccatttgaccaacaac 34534062  T
Q  346 cat 348  Q
    |||    
T  34534063 cat 34534065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 375
Target Start/End: Complemental strand, 38633007 - 38632780
Alignment:
Q  151 ccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctcc 250  Q
    |||||||||||||| || |||||||| |||||| | |||||||||||||| |  |||| |||||||||||||| |||||  ||  ||   ||| ||  ||    
T  38633007 ccccatttgcaaatttataaactccaaatccatatctaagtccatttgacaaataaccatcaaaaacatcaccgttagctgaatccaaaatccatctccc 38632908  T
Q  251 at---ccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaacca 347  Q
    ||   ||||||||||| |||||||||||||  | ||||||||||||||| || ||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  38632907 ataatccattttgtctattttccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaacca 38632808  T
Q  348 ttaaaatgatcaccattagcccaactca 375  Q
    |  ||   ||||||| ||||||||||||    
T  38632807 tcgaagacatcaccagtagcccaactca 38632780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 39848582 - 39848375
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||||||  ||||| |||||||| ||||||||  ||||||||||||||| ||||| |  || ||||| ||| || ||||||||||  |||||    
T  39848582 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatctccagtatcccaactcataatccct 39848483  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
      ||||||| |||  | |||||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||| ||||  || ||||  ||||||    
T  39848482 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtataagcgcaattgatcgacaac 39848383  T
Q  346 cattaaaa 353  Q
    ||| ||||    
T  39848382 catcaaaa 39848375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 38453894 - 38454020
Alignment:
Q  151 ccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctcc 250  Q
    |||||||| || ||||| |||||||| ||||||||| ||||| ||||||||| ||||| |||||||||||||||| || ||||||||| ||||||| |||    
T  38453894 ccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatcaggccaactcatagtccctcttcc 38453993  T
Q  251 atccattttgtcttttttccaatttcc 277  Q
    |||  |||| |||||||||||||||||    
T  38453994 atctcttttatcttttttccaatttcc 38454020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 146 - 375
Target Start/End: Original strand, 34533587 - 34533816
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||| ||| || || ||||||||||||||||| ||||||||||| |||| ||||| || |||||||||||    ||||| ||| |  |||||    
T  34533587 gacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcaccgcctgcccatctcttaatccct 34533686  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
      ||||||| |||   |||||||||||| |||  | | |||||||||||||  ||||||| |||||||| |||||||||||||||||||||||  |||||    
T  34533687 tttccatccttttccccttttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaac 34533786  T
Q  346 cattaaaatgatcaccattagcccaactca 375  Q
    |||  |||  | ||||||||||||| ||||    
T  34533787 catcgaaaacaacaccattagcccatctca 34533816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 153 - 338
Target Start/End: Original strand, 34916295 - 34916480
Alignment:
Q  153 ccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccat 252  Q
    ||||| ||| ||||| |||||||| ||||||||  |||||||||||||||  |||| || |||| | |||||||| ||||| ||||  |||||  |||||    
T  34916295 ccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcaccattaccccaattcataatcccttttccat 34916394  T
Q  253 ccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgac 338  Q
    || |||   |||||| |||||||||   |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||    
T  34916395 ccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgac 34916480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 348
Target Start/End: Complemental strand, 39848728 - 39848518
Alignment:
Q  141 atgtcgacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatgg 240  Q
    |||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||   ||||| ||||||||||||||||||||||||   |       
T  39848728 atgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaa 39848629  T
Q  241 tccctcctccatc---cattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttga 337  Q
    || |||  |||||   ||||||   | ||||||||||||| ||  |||||||||||||| |  |||||||||||||| ||||||||  ||||||||||||    
T  39848628 tcgctctcccatcatccattttccatgttttccaatttccaatggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttga 39848529  T
Q  338 cagacaaccat 348  Q
    |  ||||||||    
T  39848528 ccaacaaccat 39848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 296
Target Start/End: Original strand, 34539031 - 34539176
Alignment:
Q  151 ccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctcc 250  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||| | ||||||||| |||||||||||| ||||  ||||   |||    
T  34539031 ccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaattcataatcccatttcc 34539130  T
Q  251 atccattttgtcttttttccaatttccgatatagacatccccattt 296  Q
    |||  ||||   |||||||||||||||  |||||||||| ||||||    
T  34539131 atctcttttcctttttttccaatttccattatagacatcgccattt 34539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 146 - 418
Target Start/End: Original strand, 38453751 - 38454023
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| |||||||| |||||||| ||||||||  ||||||| |||||||||  |||   ||||| |||||   |||||| |||| |||| |||   |||||    
T  38453751 gacatccccatttacaaatctataaactccaagtccatgtctaagtccatgcgacagacaaccatcaaattgatcaccgttagtccaattcaaaatccct 38453850  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
    | |||||||| | |  ||  ||||||||||||  | |  ||||||||||||||| |||||||||||||| ||||||||  ||||| |||||||  |||||    
T  38453851 cttccatccaatctccctgctttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaac 38453950  T
Q  346 cattaaaatgatcaccattagcccaactcaaattccctcctccatccaatttacctgttttccaatttccagt 418  Q
    ||| ||||  |||||||| || |||||||| | |||||| ||||||   |||| || ||||||||||||||||    
T  38453951 catcaaaaacatcaccatcaggccaactcatagtccctcttccatctcttttatcttttttccaatttccagt 38454023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 146 - 348
Target Start/End: Original strand, 34916426 - 34916628
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccct 245  Q
    |||| ||||||||||||||||| |||||||| |||||||| || |||||||||||||  |||| || ||||||||| | ||||||||  ||||  |||||    
T  34916426 gacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgaccaataaccatcgaaaacatcatcgttagcccatttcataatccct 34916525  T
Q  246 cctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaac 345  Q
      ||||| | |||   |||||| |||||||||  | ||||| |  |||||| || |||||||||||||| ||||||||  |||||||||||||  |||||    
T  34916526 tttccatgcctttcccctttttcccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaac 34916625  T
Q  346 cat 348  Q
    |||    
T  34916626 cat 34916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 371
Target Start/End: Original strand, 34539027 - 34539113
Alignment:
Q  285 acatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagcccaa 371  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||||||||||  |||||||||||||  ||| ||||||||||||    
T  34539027 acatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaa 34539113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 412
Target Start/End: Original strand, 34544732 - 34544903
Alignment:
Q  241 tccctcctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacag 340  Q
    |||||| ||| |||||||| || |||||  |||||||    ||||||| |||||||  |||||||||||||||| ||||||||||| |||||||||||      
T  34544732 tccctcttccgtccattttatcatttttaaaatttcctgcgtagacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgacca 34544831  T
Q  341 acaaccattaaaatgatcaccattagcccaactcaaattccctcctccatccaatttacctgttttccaatt 412  Q
    ||| ||||| |||  |||||||||| ||||| ||| | |||||| |||||||| |||| |  ||||||||||    
T  34544832 acatccattgaaaacatcaccattaacccaattcataatccctcttccatccattttatcatttttccaatt 34544903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 338
Target Start/End: Original strand, 34916157 - 34916342
Alignment:
Q  153 ccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccat 252  Q
    ||||||||||||||| |||||||| | |||||| |  |||||||||||||  |||| || ||||||||||| ||||||||  ||||  |||||  |||||    
T  34916157 ccatttgcaaatctataaactccatagccatgtttctgtccatttgaccaataaccatcgaaaacatcaccgttagcccatttcataatcccttttccat 34916256  T
Q  253 ccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgac 338  Q
    || |||   |||||| |||||||||  | ||||| |  |||||  || |||||||||||||| ||||||||  |||||||||||||    
T  34916257 ccctttcccctttttcccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgac 34916342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 34549174 - 34549262
Alignment:
Q  137 accaatgtcgacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccat 225  Q
    |||||||| ||||  |||||||| ||||||| |||||||| |||||||| |||||||||| ||||| ||||| ||||||||||||||||    
T  34549174 accaatgtagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcaccat 34549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 38632632 - 38632548
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcc 230  Q
    |||| |||||||||||  ||||||||||||| ||||||||| ||||||||||||||| ||| | || ||||||||||||||||||    
T  38632632 gacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcaccattagcc 38632548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 36951537 - 36951413
Alignment:
Q  161 aaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccatccattttg 260  Q
    ||||||| ||||||||||||| ||| ||||||||||| |||| ||||| ||||||||||| || |||  |||  ||||  |||| | |||||| |||||     
T  36951537 aaatctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatcgccgttaaaccacttcataatcccccttccatctattttc 36951438  T
Q  261 tcttttttccaatttccgatataga 285  Q
     |||||||||||||||| |||||||    
T  36951437 ccttttttccaatttccaatataga 36951413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 39848338 - 39848214
Alignment:
Q  153 ccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccat 252  Q
    |||||||||||||||||||||||| |||||| || ||   |||||||||| ||||| | ||||||||||||||||||| || ||    |||||| |||||    
T  39848338 ccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaaccattaaaaacatcaccattagccaaagtctcaatccctcttccat 39848239  T
Q  253 ccattttgtcttttttccaatttcc 277  Q
    |  |||| || ||||||||||||||    
T  39848238 cttttttatcatttttccaatttcc 39848214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 34533566 - 34533651
Alignment:
Q  263 ttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccat 348  Q
    ||||||||| ||||| |||||||||||||||||  || || ||||||||||| |||||||| ||||||||||| ||  ||||||||    
T  34533566 ttttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccat 34533651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 34916107 - 34916204
Alignment:
Q  241 tccctcctccatccattttgtcttttttccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgac 338  Q
    |||||| |||||||||||| |  ||||||||||||||  | |||||||| |||||| ||||||||||||||||| | |||||| |  |||||||||||    
T  34916107 tccctcttccatccattttattatttttccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgtccatttgac 34916204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 34549181 - 34549262
Alignment:
Q  282 tagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccat 363  Q
    ||||||| |||||||  |||||||||||||||| |||||||| |||||||||| |||  |||||||| ||||  ||||||||    
T  34549181 tagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcaccat 34549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 34916571 - 34916656
Alignment:
Q  153 ccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcat 238  Q
    ||||||||| ||||| |||||||| ||||||||  ||||||||||||||| ||||| || |||| | |||||||| ||||| ||||    
T  34916571 ccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccatcgaaaatagcaccattaccccaattcat 34916656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 39848866 - 39848730
Alignment:
Q  279 atatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagcccaactcaaat 378  Q
    |||| ||||||||| ||  || |||||||||||||| |||||||| ||||||||||||||  ||||||||  ||   |||||||  | ||||||||| |     
T  39848866 atatcgacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataa 39848767  T
Q  379 tccctcctccatccaatttacctgttttccaatttcc 415  Q
    |||||  |||||||| |||  || |||||||||||||    
T  39848766 tccctgttccatccattttgtcttttttccaatttcc 39848730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 34548525 - 34548600
Alignment:
Q  157 ttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagccca 232  Q
    |||||||| || ||||| || |||||||| ||| |||||||||||||| ||| || |||| |||||||||||||||    
T  34548525 ttgcaaatatataaacttcaaatccatgtctaactccatttgaccagccaccatcgaaaatatcaccattagccca 34548600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 38632633 - 38632548
Alignment:
Q  283 agacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagcc 368  Q
    |||||||||||||| ||  |||| |||||||||||||||||  |||||||||||||  |||| |||  |||  |||||||||||||    
T  38632633 agacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcaccattagcc 38632548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 39848444 - 39848368
Alignment:
Q  146 gacacccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcac 222  Q
    ||||||| |||||||| ||||| |||||||| |||||||||||||  || |||| |  ||||| |||||||||||||    
T  39848444 gacacccacatttgcatatctataaactccaaatccatgtataagcgcaattgatcgacaaccatcaaaaacatcac 39848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 36951537 - 36951483
Alignment:
Q  299 aaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaa 353  Q
    |||||||||||||||| |||| ||||||||||||||| ||  |||||||| ||||    
T  36951537 aaatctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaa 36951483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 39848361 - 39848261
Alignment:
Q  268 tccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgt-ctaagtccatttgacagacaaccattaaaatgatcaccattag 366  Q
    ||||||||||  | ||||| || |||||| |||||||| |||||||| |||||| | | ||||| |||||||  |||||||||||||  |||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtc-atttgaccaacaaccattaaaaacatcaccattag 39848263  T
Q  367 cc 368  Q
    ||    
T  39848262 cc 39848261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 34548528 - 34548568
Alignment:
Q  298 caaatctataaactccaaatccatgtctaagtccatttgac 338  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  34548528 caaatatataaacttcaaatccatgtctaactccatttgac 34548568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 78 - 418
Target Start/End: Original strand, 7045754 - 7046084
Alignment:
Q  78 attgttctatttgagcatgtgtatgatccgttgtcatggagaagtttacccctgaagttaccaatgtcgacacccccatttgcaaatctaaaaactccag 177  Q
    ||||||| |||||| |||||| |   ||||||||||| |||||||| || | | ||||||||||||| |||| | |||||||||||| |||||||||||     
T  7045754 attgttccatttgaccatgtgcactttccgttgtcatagagaagttgactcttaaagttaccaatgttgacatctccatttgcaaatgtaaaaactccat 7045853  T
Q  178 atccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccatccattttgtcttttttccaatttcc 277  Q
    |||||||||||||||||||||||||          ||||||||| ||||| ||||||||||| |||||| |||||||||||| |||| ||||||||||||    
T  7045854 atccatgtataagtccatttgacca----------aaaacatcaacattaacccaactcatgatccctcttccatccattttctcttctttccaatttcc 7045943  T
Q  278 gatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagcccaactcaaa 377  Q
        |||||||| ||||||  |||| |||||||||||||||||| ||| |||||||||||||| ||||||| ||||  |||||||||| |||||   |||    
T  7045944 tccgtagacatcaccatttctaaatttataaactccaaatccatctctgagtccatttgacaggcaaccatcaaaactatcaccattaacccaatataaa 7046043  T
Q  378 ttccctcctccatccaatttacctgttttccaatttccagt 418  Q
     ||||| ||||||||| |||  |  ||||||||| ||||||    
T  7046044 atcccttctccatccattttctcatttttccaatatccagt 7046084  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 416
Target Start/End: Original strand, 7045973 - 7046220
Alignment:
Q  169 aaactccagatccatgtataagtccatttgaccagcaaccgtcaaaaacatcaccattagcccaactcatggtccctcctccatccattttgtctttttt 268  Q
    |||||||| |||||| | | ||||||||||||  |||||| ||||||  |||||||||| |||||   |   ||||| ||||||||||||| || |||||    
T  7045973 aaactccaaatccatctctgagtccatttgacaggcaaccatcaaaactatcaccattaacccaatataaaatcccttctccatccattttctcattttt 7046072  T
Q  269 ccaatttccgatatagacatccccatttacaaatctataaactccaaatccatgtctaagtccatttgacagacaaccattaaaatgatcaccattagcc 368  Q
    ||||| |||  | ||||||||||| ||| || || |||||  ||||||| |||||  || ||||||| ||  |  || || ||||  |||||||||||||    
T  7046073 ccaatatccagtgtagacatccccgtttccacatatataacttccaaattcatgtacaactccatttaactaaggactataaaaaaaatcaccattagcc 7046172  T
Q  369 caactcaaattccctcctccatccaatttacctgttttccaatttcca 416  Q
    ||||||| | |||||  |||||||| |||| || ||||||||||||||    
T  7046173 caactcacaatcccttttccatccattttatcttttttccaatttcca 7046220  T

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